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Items: 10

1.

Using GINI2 to identify novel mutations in candidate tumor suppressor genes in colon cancer cells

(Submitter supplied) Inhibition of the nonsense mediated decay (NMD) mechanism in cells results in stabilization of transcripts carrying premature translation termination codons. A strategy referred to as gene indentification by NMD inhibition (GINI) has been proposed to identify genes carrying nonsense mutations (Noensie & Dietz, 2001). Genes containing frameshift mutations in colon cancer cell line have been identifying mutatnt genes using GINI, we have now further improved the strategy. more...
Organism:
Homo sapiens
Type:
Expression profiling by array
Platform:
GPL570
8 Samples
Download data: CEL
Series
Accession:
GSE5486
ID:
200005486
2.

[HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 06, 2012: annotation table updated with netaffx build 32 June 23, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site Complete coverage of the Human Genome U133 Set plus 6,500 additional genes for analysis of over 47,000 transcripts All probe sets represented on the GeneChip Human Genome U133 Set are identically replicated on the GeneChip Human Genome U133 Plus 2.0 Array. more...
Organism:
Homo sapiens
602 DataSets
5670 Series
61 Related Platforms
175576 Samples
Download data
Platform
Accession:
GPL570
ID:
100000570
3.

SW480_Em

Organism:
Homo sapiens
Source name:
SW480 cell line treated with emetine
Platform:
GPL570
Series:
GSE5486
Download data: CEL
Sample
Accession:
GSM126424
ID:
300126424
4.

SW480_Con

Organism:
Homo sapiens
Source name:
SW480 cell line untreated
Platform:
GPL570
Series:
GSE5486
Download data: CEL
Sample
Accession:
GSM126423
ID:
300126423
5.

SW480_Caff+Act/Caff

Organism:
Homo sapiens
Source name:
SW480 cell line treated with Caffeine and Actinomycin D/Caffeine
Platform:
GPL570
Series:
GSE5486
Download data: CEL
Sample
Accession:
GSM126422
ID:
300126422
6.

SW480_Caff+Act

Organism:
Homo sapiens
Source name:
SW480 cell line treated with Caffeine and Actinomycin D
Platform:
GPL570
Series:
GSE5486
Download data: CEL
Sample
Accession:
GSM126421
ID:
300126421
7.

LS180_Em

Organism:
Homo sapiens
Source name:
LS180 cell line treated with emetine
Platform:
GPL570
Series:
GSE5486
Download data: CEL
Sample
Accession:
GSM126420
ID:
300126420
8.

LS180_Con

Organism:
Homo sapiens
Source name:
LS180 cell line untreated
Platform:
GPL570
Series:
GSE5486
Download data: CEL
Sample
Accession:
GSM126419
ID:
300126419
9.

LS180_Caff+Act/Caff

Organism:
Homo sapiens
Source name:
LS180 cell line treated with Caffeine and Actinomycin D/Caffeine
Platform:
GPL570
Series:
GSE5486
Download data: CEL
Sample
Accession:
GSM126418
ID:
300126418
10.

LS180_Caff+Act

Organism:
Homo sapiens
Source name:
LS180 cell line treated with Caffeine and Actinomycin D
Platform:
GPL570
Series:
GSE5486
Download data: CEL
Sample
Accession:
GSM126417
ID:
300126417
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