GSE9522[Accession] - GEO DataSets

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Items: 12

Select item 2000095221.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_Herbivory

(Submitter supplied) From a set of 15 standard, normalized or full-length cDNA libraries, we generated 139 007 3'- or 5'-end sequenced ESTs, representing more than one-third of the c. 385 000 publicly available Populus ESTs. Clustering and assembly of 107 519 3'-end ESTs resulted in 14 451 contigs and 20 560 singletons, altogether representing 35 011 putative unique transcripts, or potentially more than three-quarters of the predicted c. more...

Organism:: Populus; Populus trichocarpa x Populus deltoides

Type:: Expression profiling by array

Platform:: GPL5921
10 Samples

Download data: TIFF

Series

Accession:: GSE9522

ID:: 200009522

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000059212.

Treenomix poplar 15.5K cDNA microarray

(Submitter supplied) Corning UltraGaps Protocol: The 15,496 clones from 14 poplar cDNA libraries (Ralph et al., 2006) were selected based on a CAP3 assembly (Huang and Madan, 1999; 95% identity and 40 bp overlap) of ca. 37,000 high-quality 3’ ESTs (i.e. longest available EST sequence from each putative unique transcript). Following in silico selection of candidates, clones were robotically rearrayed from daughter glycerol stock 384-well plates into 96-well plates prefilled with 7% glycerol in LB + ampicillin, incubated overnight at 37°C, and checked for uniform optical density. more...

Organism:: Populus

8 Series
158 Samples

Download data

Platform

Accession:: GPL5921

ID:: 100005921

PubMed Similar studies

Select item 3002347713.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb10

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #3, untreated control (channel 1) Hybrid poplar leaves, tree #3, forest tent caterpillar feeding for 24 hours (channel 2)

Platform:: GPL5921
Series:: GSE9522

Download data: TIFF

Sample

Accession:: GSM234771

ID:: 300234771

Select item 3002347704.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb9

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #2, forest tent caterpillar feeding for 24 hours (channel 1) Hybrid poplar leaves, tree #2, untreated control (channel 2)

Platform:: GPL5921
Series:: GSE9522

Download data: TIFF

Sample

Accession:: GSM234770

ID:: 300234770

Select item 3002347695.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb8

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #4, untreated control (channel 1) Hybrid poplar leaves, tree #4, forest tent caterpillar feeding for 24 hours (channel 2)

Platform:: GPL5921
Series:: GSE9522

Download data: TIFF

Sample

Accession:: GSM234769

ID:: 300234769

Select item 3002347686.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb7

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #5, untreated control (channel 1) Hybrid poplar leaves, tree #5, forest tent caterpillar feeding for 24 hours (channel 2)

Platform:: GPL5921
Series:: GSE9522

Download data: TIFF

Sample

Accession:: GSM234768

ID:: 300234768

Select item 3002347677.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb6

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #4, forest tent caterpillar feeding for 24 hours (channel 1) Hybrid poplar leaves, tree #4, untreated control (channel 2)

Platform:: GPL5921
Series:: GSE9522

Download data: TIFF

Sample

Accession:: GSM234767

ID:: 300234767

Select item 3002347668.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb5

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #5, forest tent caterpillar feeding for 24 hours (channel 1) Hybrid poplar leaves, tree #5, untreated control (channel 2)

Platform:: GPL5921
Series:: GSE9522

Download data: TIFF

Sample

Accession:: GSM234766

ID:: 300234766

Select item 3002347659.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb4

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #1, forest tent caterpillar feeding for 24 hours (channel 1) Hybrid poplar leaves, tree #1, untreated control (channel 2)

Platform:: GPL5921
Series:: GSE9522

Download data: TIFF

Sample

Accession:: GSM234765

ID:: 300234765

Select item 30023476410.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb3

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #1, untreated control (channel 1) Hybrid poplar leaves, tree #1, forest tent caterpillar feeding for 24 hours (channel 2)

Platform:: GPL5921
Series:: GSE9522

Download data: TIFF

Sample

Accession:: GSM234764

ID:: 300234764

Select item 30023476311.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb2

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #3, forest tent caterpillar feeding for 24 hours (channel 1) Hybrid poplar leaves, tree #3, untreated control (channel 2)

Platform:: GPL5921
Series:: GSE9522

Download data: TIFF

Sample

Accession:: GSM234763

ID:: 300234763

Select item 30023475912.

HybridPoplar_H11-11_Leaves_MalacosomaDisstria_HerbivoryHyb1

Organism:: Populus trichocarpa x Populus deltoides

Source name:: Hybrid poplar leaves, tree #2, untreated control (channel 1) Hybrid poplar leaves, tree #2, forest tent caterpillar feeding for 24 hours (channel 2)