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Items: 3

1.

Nanopore sequencing combining AlphaFold2 identifies alternative splicing derived putative neoantigens in uveal melanoma

(Submitter supplied) We employed a hybrid method based on Oxford Nanopore long-read sequencing and Illumina sequencing to characterize the AS landscapes, and to identify AS-derived neoantigens. Furthermore, we used the AlphaFold2 algorithm to analyze the structure of these putative neoantigens, thus offering structural insights for further drug development. These results lay the foundation for the development of therapies targeting UM-specific, AS-derived neoantigens.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL26167 GPL24676
38 Samples
Download data: TXT
Series
Accession:
GSE206464
ID:
200206464
2.

PromethION (Homo sapiens)

Organism:
Homo sapiens
93 Series
775 Samples
Download data
Platform
Accession:
GPL26167
ID:
100026167
3.

LR UM Case14

Organism:
Homo sapiens
Source name:
eye
Platform:
GPL26167
Series:
GSE206464
Download data: TXT
Sample
Accession:
GSM6254974
ID:
306254974
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db=gds|term=GSM6254974[Accession]|query=1|qty=2|blobid=MCID_675b53151fc51b7b0135ce82|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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