GSM65750[Accession] - GEO DataSets

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Items: 3

Select item 2000030081.

Small RNA identification in Arabidopsis thaliana using modified MPSS

(Submitter supplied) Small RNAs play important regulatory roles in most eukaryotes but only a small proportion of these molecules have been identified. We sequenced more than two million small RNAs from seedlings and the inflorescence of the model plant Arabidopsis thaliana. Known and new miRNAs were among the most abundant of the non-redundant set of more than 75,000 sequences, whereas more than half represented lower abundance small-interfering RNAs (siRNAs) that match repetitive sequences, intergenic regions, and genes. more...

Organism:: Arabidopsis thaliana

Type:: Expression profiling by MPSS

Platform:: GPL2675
4 Samples

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Accession:: GSE3008

ID:: 200003008

PubMed Similar studies

Select item 1000026752.

Small RNA identification in Arabidopsis thaliana using modified MPSS

(Submitter supplied) All MPSS was performed essentially as described by Brenner et al. (Nat Biotechnol. 2000 18:630). The specific modifications to the method for the MPSS sequencing of small RNAs are described in the paper associated with this dataset (Lu et al., 2005). The signatures with "flag = 1" match to tRNAs, rRNAs, snoRNAs and snRNAs.