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Status
Public on Sep 02, 2005
Title
Small RNA identification in Arabidopsis thaliana using modified MPSS
Technology type
MPSS
Distribution
virtual
Organism
Arabidopsis thaliana
Description
All MPSS was performed essentially as described by Brenner et al. (Nat Biotechnol. 2000 18:630). The specific modifications to the method for the MPSS sequencing of small RNAs are described in the paper associated with this dataset (Lu et al., 2005). The signatures with "flag = 1" match to tRNAs, rRNAs, snoRNAs and snRNAs.
Contributor(s)
Meyers BC
Submission date
Jul 26, 2005
Last update date
Jul 19, 2006
Contact name
Blake C. Meyers
E-mail(s)
[email protected]
Phone
314-587-1422
Organization name
Donald Danforth Plant Science Center
Lab
Meyers lab
Street address
975 N Warson Road
City
St. Louis
State/province
MO
ZIP/Postal code
63132
Country
USA
Samples (5)
GSM65747 , GSM65748 , GSM65749 , GSM65750 , GSM120717
Series (2)
GSE3008
Small RNA identification in Arabidopsis thaliana using modified MPSS
GSE5343
Small RNA identification in Arabidopsis thaliana using 454 data
Data table header descriptions
ID
HITS
Number of genome hits for each signature
FLAG
Data table
ID
HITS
FLAG
AAAAAAAAAAACAGGGA
2
0
AAAAAAAAAAGCCTTTG
2
0
AAAAAAAAAATTTTGCT
2
0
AAAAAAAAAGGGCGTCC
0
0
AAAAAAAAAGTATTGAC
4
0
AAAAAAAAATCGGATCA
3
0
AAAAAAAACCATTTCTC
1
0
AAAAAAAACCTGGTCGG
0
0
AAAAAAAAGTATTGACC
2
0
AAAAAAAATCAGACAAA
4
0
AAAAAAAATCCATTGGT
1
0
AAAAAAAATTGTTGCCG
2
0
AAAAAAACCACAGTTGC
0
0
AAAAAAACCCACGGCAC
0
0
AAAAAAACCCGCGGCAC
0
0
AAAAAAACCGGCCGACC
0
0
AAAAAAACGAGTTGGCC
0
0
AAAAAAACGCTGAGAAG
0
0
AAAAAAACGCTTGGCTG
0
0
AAAAAAACGTTGACCCG
0
0
Total number of rows: 181582 Table truncated, full table size 3910 Kbytes .
Supplementary data files not provided