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Platform GPL2675 Query DataSets for GPL2675
Status Public on Sep 02, 2005
Title Small RNA identification in Arabidopsis thaliana using modified MPSS
Technology type MPSS
Distribution virtual
Organism Arabidopsis thaliana
 
Description All MPSS was performed essentially as described by Brenner et al. (Nat Biotechnol. 2000 18:630).
The specific modifications to the method for the MPSS sequencing of small RNAs are described in the paper associated with this dataset (Lu et al., 2005).
The signatures with "flag = 1" match to tRNAs, rRNAs, snoRNAs and snRNAs.
 
Contributor(s) Meyers BC
Submission date Jul 26, 2005
Last update date Jul 19, 2006
Contact name Blake C. Meyers
E-mail(s) [email protected]
Phone 314-587-1422
Organization name Donald Danforth Plant Science Center
Lab Meyers lab
Street address 975 N Warson Road
City St. Louis
State/province MO
ZIP/Postal code 63132
Country USA
 
Samples (5) GSM65747, GSM65748, GSM65749, GSM65750, GSM120717
Series (2)
GSE3008 Small RNA identification in Arabidopsis thaliana using modified MPSS
GSE5343 Small RNA identification in Arabidopsis thaliana using 454 data

Data table header descriptions
ID
HITS Number of genome hits for each signature
FLAG

Data table
ID HITS FLAG
AAAAAAAAAAACAGGGA 2 0
AAAAAAAAAAGCCTTTG 2 0
AAAAAAAAAATTTTGCT 2 0
AAAAAAAAAGGGCGTCC 0 0
AAAAAAAAAGTATTGAC 4 0
AAAAAAAAATCGGATCA 3 0
AAAAAAAACCATTTCTC 1 0
AAAAAAAACCTGGTCGG 0 0
AAAAAAAAGTATTGACC 2 0
AAAAAAAATCAGACAAA 4 0
AAAAAAAATCCATTGGT 1 0
AAAAAAAATTGTTGCCG 2 0
AAAAAAACCACAGTTGC 0 0
AAAAAAACCCACGGCAC 0 0
AAAAAAACCCGCGGCAC 0 0
AAAAAAACCGGCCGACC 0 0
AAAAAAACGAGTTGGCC 0 0
AAAAAAACGCTGAGAAG 0 0
AAAAAAACGCTTGGCTG 0 0
AAAAAAACGTTGACCCG 0 0

Total number of rows: 181582

Table truncated, full table size 3910 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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