GEO DataSets

(Submitter supplied) Plants were treated with MeJA and mRNA was extracted and sequenced

Organism:

Brachypodium distachyon

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17337

8 Samples

Download data: TXT

(Submitter supplied) Plants were grown for 21 days under LD conditions and RNA was extracted and sequenced

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL13222

6 Samples

Download data: TXT

(Submitter supplied) To reveal the underlying molecular mechanism of jasmonate inhibits gibberellins signaling in rice, we performed transcriptional profiling of wild type nipponbare and mutant coi1-13 plants on a global scale using the Affymetrix GeneChip Rice Genome Array

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL2025

6 Samples

Download data: CEL

(Submitter supplied) NINJA (At4g28910) and TOPLESS proteins function as negative regulators of jasmonate responses. Our results point to TPL proteins as general co-repressors that affect multiple signalling pathways through the interaction with specific adaptor proteins. This new insight reveals how stress- and growth-related signalling cascades use common molecular mechanisms to regulate gene expression in plants.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL9020

8 Samples

Download data: GPR

(Submitter supplied) The plant hormone jasmonate (JA) plays important roles in the regulation of defense responses in many plants. To clarify the response to JA in rice at gene expression level, we performed a microarray analysis using the Agilent Rice Oligo Microarray (44k, custom-made; Agilent Technologies, Redwood City, CA, USA). As a result, treatment of JA caused high upregulation of many defense-related genes including pathogenesis-related (PR) genes in rice. more...

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

16 Samples

Download data: TXT

(Submitter supplied) Expression Data of Barley Crown and Growing Point Tissue Under Salt Stress abd JA treatment Keywords: treatments (control, salt stressed, JA and JA plus salt stress)

Organism:

Hordeum vulgare

Type:

Expression profiling by array

Platform:

GPL1340

8 Samples

Download data

(Submitter supplied) Next-generation sequencing (NGS) was used to analysis the expression profiling of cotton seedlings under TOR inhibition by AZD. TOR inhibition significantly altered the expression levels of anabolic and catabolic processes related genes, photosynthesis and phytohormone signaling pathways related genes. Expression profiling analysis reveals that TOR is a key player in cotton seedlings growth.

Organism:

Gossypium hirsutum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23158

6 Samples

Download data: TSV

(Submitter supplied) Jasmonate (JA) is a plant hormone that controls trade-offs between plant growth and responses to biotic and abiotic stresses. Although recent studies uncover core mechanism for JA-induced responses in Arabidopsis thaliana, it remains elusive how plants attenuate those responses. We report here that a basic-helix-loop-helix type transcription factor named JA-INDUCIBLE MYC2-LIKE1 (JAM1) acts as a transcriptional repressor and negatively regulates JA signaling. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL12621

24 Samples

Download data: TXT

(Submitter supplied) Jasmonate (JA) signaling plays a key role in mediating both resistance and susceptibility to the root-infecting fungal pathogen Fusarium oxysporum. Within this system, the roles of the JA-signaling repressor gene family of JASMONATE ZIM-domain (JAZ) genes had not been investigated. By screening JAZ T DNA insertion lines for altered resistance or susceptibility to F. oxysporum, we identified a JAZ7 mutant (jaz7-1D) highly susceptible to F. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL198

16 Samples

Download data: CEL

(Submitter supplied) A rice transcription factor OsMYC2 plays important role in the regulation of defense responses in rice. To clarify the OsMYC2-responsive genes, we performed a microarray analysis using the Agilent Rice Oligo Microarray (44k, Agilent Technologies, Redwood City, CA, USA). As a result, many defense-related genes including pathogenesis-related (PR) genes were upregulated in the OsMYC2-overexpressing transgenic rice.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

6 Samples

Download data: TXT

(Submitter supplied) To investigate how JA regulates Al-induced inhibition of root growth, a transcriptional analysis through RNAseq was performed by comparing the coi1-2 mutant and WT plants in the presence or absence of Al. In the absence of Al, 149 and 147 genes were up- and down-regulated, respectively, at least 2-fold in the roots of the coi1-2 mutant and WT plants. In the presence of Al, 1747 and 5838 genes were up- and down-regulated, respectively, in the roots of WT plants, while 1449 and 3773 genes were up- and down-regulated, respectively in the coi1-2 mutant. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL13222

4 Samples

Download data: XLS

(Submitter supplied) To find genes directly regulated by ORA47, the P35S:ORA47-GR transgenic line was grown in the normal condition, treated with DEX and as well cycloheximide (CYC), prevented secondary transcriptional regulation downstream of ORA47 regulation by blocking protein synthesis. Gene expression patterns were then analyzed by microarray.

Organism:

Arabidopsis thaliana

Type:

Expression profiling by array

Platform:

GPL9020

4 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of WT and rss3 root tips, grown in the presense or absense of 100 mM NaCl for 3 days.

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL6864

12 Samples

Download data: TXT

(Submitter supplied) Phosphate (Pi) deficiency severely affects crop yield. Modern high yielding rice genotypes are sensitive to Pi deficiency whereas traditional rice cultivars are naturally compatible to low Pi ecosystems. However, the underlying molecular mechanisms for low Pi tolerance in traditional genotypes remain largely elusive. To delineate the molecular mechanisms for low Pi tolerance, two contrasting rice genotypes - Dular (low Pi tolerant) and PB1 (low Pi sensitive) - have been selected. more...

Organism:

Oryza sativa

Type:

Expression profiling by array

Platform:

GPL2025

24 Samples

Download data: CEL

(Submitter supplied) Suppression mechanism employed by transcriptional repressors is commonly existed in diverse phytohormone signaling. In Arabidopsis thaliana, JASMONATE-ZIM DOMAIN (JAZ) proteins act as transcriptional repressors and involve in different aspects of the JA signaling network, through recruiting general co-repressors TOPLESS (TPL) and TPL-related proteins (TPRs). To accomplish overlapping but also finely separated functions of JAZ proteins, specificadaptor proteins are employed in JA signaling. more...

Organism:

Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platform:

GPL13222

18 Samples

Download data: TXT