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Links from GEO DataSets

Items: 10

1.

Chitin attenuates virulence gene expression of Listeria monocytogenes in vitro

(Submitter supplied) External signals are key for bacteria to sense their immediate environment and fine-tune gene expression accordingly. The foodborne pathogen Listeria monocytogenes senses a range of environmental cues in order to activate or deactivate the virulence-inducing transcriptional factor PrfA during transition between infectious and saprophytic lifecycles. Chitin is an abundant biopolymer formed from linked β-(1–4)-N-acetyl-D-glucosamine residues associated with fungi, the exoskeleton of insects and often incorporated into foods as a thickener or stabiliser. more...
Organism:
Listeria monocytogenes
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26477
6 Samples
Download data: XLSX
Series
Accession:
GSE154844
ID:
200154844
2.

Interference of PTS components with PrfA of L.monocytogenes

(Submitter supplied) Analysis of L. monocytogenes ptsH, hprK and ccpA mutants defective in carbon catabolite repression (CCR) control revealed significant alterations in the expression of PrfA-dependent genes. The hprK mutant showed high up-regulation of PrfA-dependent virulence genes upon growth in glucose-containing media whereas expression of these genes was even slightly down-regulated in the ccpA mutant when compared to the wild-type strain. more...
Organism:
Listeria monocytogenes
Type:
Expression profiling by array
Platform:
GPL4418
10 Samples
Download data
Series
Accession:
GSE6028
ID:
200006028
3.

Modulation of PrfA activity in Listeria monocytogenes upon growth in different culture media

(Submitter supplied) PrfA activity was studied in L. monocytogenes strain EGD and in an isogenic prfA deletion mutant (EGDΔprfA) carrying multiple copies of the wild-type prfA or the mutant prfA* gene (strains EGDΔprfApPrfA and EGDΔprfApPrfA*) after growth in brain heart infusion (BHI), Luria-Bertani broth (LB) or a defined minimal medium (MM) supplemented either with one of the three PTS-carbohydrates, glucose, mannose and cellobiose, or the non-PTS carbon source glycerol. more...
Organism:
Listeria monocytogenes; Listeria monocytogenes EGD-e
Type:
Expression profiling by array
Platforms:
GPL7062 GPL6554
24 Samples
Download data: TXT
Series
Accession:
GSE12151
ID:
200012151
4.

Listeria monocytogenes EGD and EGD-e

(Submitter supplied) Transcriptional profile after growth in MM (minimal medium (Premaratne et al. 2001) supplemented with 50 mM Glucose. Note: strain "EGD" has not been deposited at ATCC/NCTC. It is a derivative of the original Murray strain (Murray et al. 1926), obtained from S.H.E. Kaufmann. Strain "EGD-e" has been obtained from H. Hahn (Berlin) via T. Chakraborty (Gießen) and is deposited under ATTC BAA-679 and in the Pasteur culture collection. more...
Organism:
Listeria monocytogenes; Listeria monocytogenes EGD-e
Type:
Expression profiling by array
Platform:
GPL7062
3 Samples
Download data: TXT
Series
Accession:
GSE12146
ID:
200012146
5.

Listeria monocytogenes EGDΔprfApPrfA and EGDΔprfApPrfA* compared to the wild type strain EGD

(Submitter supplied) Transcriptional profile of prfA, the dependent genes and the PTS genes after growth in MM (minimal medium (Premaratne et al. 2001) supplemented with 50 mM glucose, cellobiose or glycerol. Keywords: prfA overexpressing strains
Organism:
Listeria monocytogenes
Type:
Expression profiling by array
Platform:
GPL6554
12 Samples
Download data: TXT
Series
Accession:
GSE12145
ID:
200012145
6.

Listeria monocytogenes EGD after growth BHI vs. LB vs. MM

(Submitter supplied) Transcriptional profile of prfA, the dependent genes and the PTS genes after growth in BHI (brain-heart-infusion), LB (Luria Bertani broth) and MM (minimal medium (Premaratne et al. 2001) (each supplemented with 50 mM Glucose). Keywords: media comparison
Organism:
Listeria monocytogenes
Type:
Expression profiling by array
Platform:
GPL6554
9 Samples
Download data: TXT
Series
Accession:
GSE12143
ID:
200012143
7.

Gene Expression Profiling of Listeria monocytogenes in monoculture and in co-culture state in the presence of Bacillus subtilis both as planktonic cells and in biofilms.

(Submitter supplied) To understand the behaviour in terms of special genome components that are expressed by L.monocytogenes in the presence of another bacterium as may be the condition in its natural environments was our objective, for which we have used microarray gene expression at different time intervals of growth from 4hrs to 24 hrs. Expression of L.monocytogenes as co-cultures, both in broth culture state and biofilm state were differentiated to that of 24hrs pure broth culture. more...
Organism:
Listeria monocytogenes J0161
Type:
Expression profiling by array
Platform:
GPL13262
8 Samples
Download data: TXT
Series
Accession:
GSE27936
ID:
200027936
8.

RNA-sequencing based analysis of Listeria monocytogenes 10403S and H7858 and corresponding ΔsigB mutants under exposure to pH 5.5 with or without bile

(Submitter supplied) In this study, RNA-seq was used to compare the transcriptomes of Listeria monocytogenes 10403S and H7858 and corresponding ΔsigB mutants under exposure to pH 5.5 with or without bile. RNA-seq was performed on all strains and conditions in four independent biological replicates. Indexed and purified cDNA libraries (12 libraries per strains) were loaded together onto an independent flow cell without any other samples; sequencing was carried out by running Hiseq 2500 (single-end, 100-bp per read). more...
Organism:
Listeria monocytogenes
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21330
32 Samples
Download data: XLSX
Series
Accession:
GSE103443
ID:
200103443
9.

Systems level analyses establish CodY as a multifaceted metabolic regulator integrating metabolism, motility and virulence in Listeria monocytogenes [ChIP-Seq]

(Submitter supplied) To gain knowledge on L. monocytogenes differential CodY activity, we set on analyzing CodY’s regulon in L. monocytogenes in both rich and minimal growth conditions using genome wide sequencing techniques. Remarkably, we identified for the first time a global regulatory role for CodY when BCAAs are limited, that are similar to those within the mammalian niche. Furthermore, our data establish CodY as a central regulator that integrates metabolism, motility, stress responses and virulence in L. more...
Organism:
Listeria monocytogenes
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL21330
8 Samples
Download data: XLSX
Series
Accession:
GSE76821
ID:
200076821
10.

Systems level analyses establish CodY as a multifaceted metabolic regulator integrating metabolism, motility and virulence in Listeria monocytogenes

(Submitter supplied) To gain knowledge on L. monocytogenes differential CodY activity, we set on analyzing CodY’s regulon in L. monocytogenes in both rich and minimal growth conditions using genome-wide sequencing techniques. Remarkably, we identified for the first time a global regulatory role for CodY when BCAAs are limited, that are similar to those within the mammalian niche. Furthermore, our data establish CodY as a central regulator that integrates metabolism, motility, stress responses and virulence in L. more...
Organism:
Listeria monocytogenes 10403S
Type:
Expression profiling by high throughput sequencing
Platform:
GPL20912
11 Samples
Download data: XLSX
Series
Accession:
GSE76159
ID:
200076159
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