NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL13262 Query DataSets for GPL13262
Status Public on Mar 11, 2011
Title Agilent-030831 Genotypic Technology Pvt. Ltd. custom Listeria monocytogenes J0161 8x15k array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Listeria monocytogenes J0161
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Genes taken from Listeria monocytogenes J0161 Sequencing Project, Broad Institute of Harvard and MIT (http://www.broadinstitute.org/)
 
Web link http://www.genotypic.co.in/custom_micro_design.html?mnu=1
Submission date Mar 10, 2011
Last update date Mar 14, 2011
Contact name Genotypic technology
E-mail(s) [email protected]
Organization name Genotypic Technology
Street address 259, Apoorva 4th cross,80 feet Road,RMV 2ND STAGE
City Bangalore
State/province Karnataka
ZIP/Postal code 560094
Country India
 
Samples (8) GSM690872, GSM690873, GSM690874, GSM690875, GSM690876, GSM690877 
Series (1)
GSE27936 Gene Expression Profiling of Listeria monocytogenes in monoculture and in co-culture state in the presence of Bacillus subtilis both as planktonic cells and in biofilms.

Data table header descriptions
ID
SEQUENCE
GeneName
SPOT_ID
Description

Data table
ID SEQUENCE GeneName SPOT_ID Description
Lis_Specific_000_10013 CCGCGACTGGTCAGAAGATCATGAGAAAATGGGAAAAGGGATTACACTAACTGATGAAGA LMOG_02174 LMOG_02174 UBA/THIF-type NAD/FAD binding protein (246 nt);Next Best hit:NC_014171.1(%identity:100,alignment length:15)
Lis_Specific_000_10037 CCGCTTGTGGTTGCTAGGAACAGTATTATTGAAACATTAGGTAGAAATCCAGTTTGGGGT LMOG_01988 LMOG_01988 hypothetical protein (342 nt);Next Best hit:NC_014171.1(%identity:100,alignment length:15)
Lis_Specific_000_10117 CCGTGAAGAAGCAAAACCGTTTGATTTTTATAAAGATATGAAACCTTTCGTTGATGAAGC LMOG_01351 LMOG_01351 hypothetical protein (366 nt);Next Best hit:NC_014171.1(%identity:95,alignment length:20)
Lis_Specific_000_10211 CCTGAACGAGTTGCGATGTTGAAATATGCGGTGGATGATATTCGCCACCTTTATACAAAT LMOG_00503 LMOG_00503 phenylalanyl-tRNA synthetase alpha subunit (1053 nt);Next Best hit:NC_008600.1(%identity:100,alignment length:14)
Lis_Specific_000_10265 CCTTGAAAAAGATGCCCCAATTATCATTAAAGCAACCAAAAAATCCGAAAAAACAACTGT LMOG_00452 LMOG_00452 hypothetical protein (666 nt);Next Best hit:LMOG_03228T0(%identity:95,alignment length:20)
Lis_Specific_000_10380 CGAAGCACTTAAAATCGTCAAAATGGACGTAGATGAAAACCCAGAAACACCTGGAAGCTT LMOG_00491 LMOG_00491 thioredoxin (312 nt);Next Best hit:NC_014171.1(%identity:100,alignment length:15)
Lis_Specific_000_10381 CGAAGCATTTGCAGGCCAATTACGCGTAGCAACTGAAAAAATTCAAGAAGCAATTACAGA LMOG_00865 LMOG_00865 ATP-dependent RNA helicase DeaD (1563 nt);Next Best hit:NC_008600.1(%identity:100,alignment length:17)
Lis_Specific_000_10462 CGACGTAGTTGTAGAAAAAGAAAAAATGGGGCGGAGTGAAGTTATAATGGAAGCAACGCA LMOG_00843 LMOG_00843 CopG family transcriptional regulator (279 nt);Next Best hit:NC_014171.1(%identity:100,alignment length:18)
Lis_Specific_000_10475 CGAGAAGCACATTCAACAACCGGAATAGGTAATAACATTGCTATCCCACACGGAAAAAGT LMOG_02654 LMOG_02654 fructose-specific PTS system IIA component (465 nt);Next Best hit:NC_014171.1(%identity:100,alignment length:14)
Lis_Specific_000_10567 CGATGCTTTAGGTATAAAAAAATTAGCTCATGACCGCGAATTAAATTATAATTTGGAGGA LMOG_01131 LMOG_01131 hypothetical protein (651 nt);Next Best hit:NC_014171.1(%identity:100,alignment length:17)
Lis_Specific_000_10636 CGCAAGCTGTAAAAGTGAACGGACTTATTTTTACATCAGGTCAACTT LMOG_00890 LMOG_00890 endoribonuclease L-PSP (378 nt);Next Best hit:NC_000964.3(%identity:100,alignment length:16)
Lis_Specific_000_10745 CGCCGCAGTAAAATCCTATTACGTAAAAGTAGAAGACGCAGGGAAACCCGTTCAAAAAAA LMOG_01060 LMOG_01060 hypothetical protein (342 nt);Next Best hit:NC_008600.1(%identity:100,alignment length:14)
Lis_Specific_000_10748 CGCCGGCACATGACTAGTTCTGATTTCGCTGAGATTACTACAAGTACTCCAGAAAAATCT LMOG_01882 LMOG_01882 50S ribosomal protein L2 (834 nt);Next Best hit:NC_008600.1(%identity:100,alignment length:14)
Lis_Specific_000_10775 CGCGATAACGCTTATTTCTTTTCTATTATTCGCTATTGATAAACGGAAAGCAATTAAACA LMOG_00892 LMOG_00892 hypothetical protein (258 nt);Next Best hit:NC_014171.1(%identity:100,alignment length:19)
Lis_Specific_000_1082 AACAGATGTAGTTGCATCTGCATTAACTCTGAACGCAAGTATTGCGAAAGCTTTCAACAT LMOG_03098 LMOG_03098 gp43 (534 nt);Next Best hit:NC_008600.1(%identity:100,alignment length:16)
Lis_Specific_000_10918 CGCTTTAAACGTACTGTTTCCAAAAGTGGAACTTTGCAAGAATCCAGAAAGCGCGAATTT LMOG_00230 LMOG_00230 30S ribosomal protein S21 (207 nt);Next Best hit:NC_000964.3(%identity:100,alignment length:14)
Lis_Specific_000_10961 CGGAAGAAGAACGAATAGAGATAGAAAAATATTTAAAATTTATCAGATCACAAAAAGAG LMOG_03088 LMOG_03088 transcriptional regulator (306 nt);Next Best hit:NC_014171.1(%identity:100,alignment length:15)
Lis_Specific_000_11037 CGGATTTAATCGTATTTGAACGTATTGAAACAACAGAAGCTCGCGCT LMOG_01907 LMOG_01907 50S ribosomal protein L17 (408 nt);Next Best hit:NC_008600.1(%identity:100,alignment length:14)
Lis_Specific_000_11087 CGGCGTTATTTATTTAGTGGAAATGCCAGAAGGTGGCGAAATCGAATTATCCGATGAACA LMOG_00067 LMOG_00067 MutT/nudix family protein (414 nt);Next Best hit:NC_014171.1(%identity:94.44,alignment length:18)
Lis_Specific_000_11133 CGGGCCGCACTTAGCTTATATGCTGGATGACTTAAAACAAAAAGTAGCCGATAAAAATGT LMOG_00814 LMOG_00814 cellobiose-specific PTS system IIB component (306 nt);Next Best hit:NC_014171.1(%identity:100,alignment length:16)

Total number of rows: 3134

Table truncated, full table size 624 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap