GEO DataSets

(Submitter supplied) The meristem-associated endosymbiont M. extorquens DSM13060 significantly increases needle and root growth of Scots pine (Pinus sylvestris L.) seedlings without producing plant hormones, but by aggregating around host nuclei. Here we studied gene expression of the pine host induced by M. extorquens DSM13060 infection. We selected the time point of 90 days post-inoculation for our analysis based, because at this point, Methylorubrum extorquens DSM13060 has systemically colonized the pine seedlings, being found throughout tissues of roots and shoots.

Organism:

Pinus sylvestris; Pinus pinaster

Type:

Expression profiling by array

Platform:

GPL29939

6 Samples

Download data: GPR, TXT, XLS, XLSX

(Submitter supplied) Coniferous trees use the oleoresin, a mixture of non-volatile non-volatile diterpene acids and a large (20-50%) volatile fraction of mono- and sesquiterpenes, as a defence tool against damaging herbivores and pathogens. Volatilization of monoterpenes increases viscosity of oleoresin and finally leading to polymerization of resin and a formation of protective solid plug. Resin storing conifers form an important source of volatile organic compounds (VOCs) mainly dominated by volatile monoterpenes. more...

Organism:

Pinus sylvestris

Type:

Expression profiling by array

Platform:

GPL19078

6 Samples

Download data: PAIR

(Submitter supplied) By exploring the large-scale transcriptome analysis, we aim to identify differentially expressed genes in the comparison between resistant and susceptible families.

Organism:

Pinus sylvestris

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32142

24 Samples

Download data: TXT

(Submitter supplied) In order for bacteria to thrive, they must be well-adapted to their environmental niche, which may involve specialized metabolism, timely adaptation to shifting environments, and/or the ability to mitigate numerous stressors. These attributes are highly dependent on cellular machinery that can sense both the external and intracellular environment. Methylorubrum extorquens is an extensively studied facultative methylotroph, an organism that can use single-carbon compounds as their sole source of carbon and energy. more...

Organism:

Methylorubrum extorquens PA1

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29261

6 Samples

Download data: XLSX

(Submitter supplied) The potency and indiscriminate nature of formaldehyde reactivity upon biological molecules make it a universal stressor. However, some organisms such as Methylorubrum extorquens possess means to rapidly and effectively mitigate formaldehyde-induced damage. EfgA is a recently identified formaldehyde sensor predicted to halt translation in response to elevated formaldehyde as a means to protect cells. more...

Organism:

Methylorubrum extorquens

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25388 GPL29545

81 Samples

Download data: TXT