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| Status |
Public on Jul 12, 2022 |
| Title |
Resistance of Scots pine seedlings against the root and stem rot conifer pathogen (Heterobasidion anosum) |
| Organism |
Pinus sylvestris |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
By exploring the large-scale transcriptome analysis, we aim to identify differentially expressed genes in the comparison between resistant and susceptible families.
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| Overall design |
mRNA profiles of needles from resistant and susceptible 1-year old Scots pine families
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| Contributor(s) |
Liu M, Wang K, Asiegbu F |
| Citation(s) |
35909743 |
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| Submission date |
Apr 06, 2022 |
| Last update date |
Aug 03, 2022 |
| Contact name |
Fred Asiegbu |
| Organization name |
University of Helsinki
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| Street address |
Latokartanonkaari 7
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| City |
Helsinki |
| ZIP/Postal code |
00014 |
| Country |
Finland |
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| Platforms (1) |
| GPL32142 |
Illumina NovaSeq 6000 (Pinus sylvestris) |
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| Samples (24)
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| GSM6030906 |
Needles, C4 |
| GSM6030907 |
Needles, C5 |
| GSM6030908 |
Needles, C6 |
| GSM6030909 |
Needles, C7 |
| GSM6030910 |
Needles, C8 |
| GSM6030911 |
Needles, F1 |
| GSM6030912 |
Needles, F2 |
| GSM6030913 |
Needles, F3 |
| GSM6030914 |
Needles, F4 |
| GSM6030915 |
Needles, F5 |
| GSM6030916 |
Needles, F6 |
| GSM6030917 |
Needles, F7 |
| GSM6030918 |
Needles, F8 |
| GSM6030919 |
Needles, H1 |
| GSM6030920 |
Needles, H2 |
| GSM6030921 |
Needles, H3 |
| GSM6030922 |
Needles, H4 |
| GSM6030923 |
Needles, H5 |
| GSM6030924 |
Needles, H6 |
| GSM6030925 |
Needles, H7 |
| GSM6030926 |
Needles, H8 |
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| Relations |
| BioProject |
PRJNA824038 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE200311_rawCounts24_gene_anno.txt.gz |
5.5 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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