txid274[Organism] - GEO DataSets

(Submitter supplied) We performed the long-read RNA sequencing technique ONT-cappable-seq on RNA samples of T. thermophilus infected with phage P23-45 5 minutes post-infection. Using this approach, we obtained the primary transcriptome at the early infection stage and sequenced it in full-length. Based on this data, we were able to identify viral transcription start sites and termination sites and uncover distinct promoter motifs.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by high throughput sequencing; Other

Platform:: GPL32746
2 Samples

Download data: TXT

Series

Accession:: GSE215811

ID:: 200215811

PubMed Full text in PMC Similar studies

Select item 2002158103.

Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for RNA-polymerases encoded by P23-45 bacteriophage

(Submitter supplied) By doing ChIP-seq with antibodies against two P23-45 RNA polymerases gp64 and gp96 we showed that both RNA polymerases interact with the phage genome at the early stage of infection. Gp96 interacts with pre-early P23-45 genes, while gp64 interacts with pre-early, early and some middle-stage genes.

Organism:: Thermus thermophilus HB8

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL32745
21 Samples

Download data: BEDGRAPH

Series

Accession:: GSE215810

ID:: 200215810

PubMed Full text in PMC Similar studies

Select item 2000660304.

mRNA expression in RNase deletion mutants of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of protein kinase and protein phosphatase deletion strains of Thermus thermophils HB8. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
59 Samples

Download data: CEL

Series

Accession:: GSE66030

ID:: 200066030

Analyze with GEO2R

Select item 2001354355.

The Thermus thermophilus DEAD-box protein Hera is a general RNA chaperone and plays a key role in tRNA metabolism

(Submitter supplied) RNA helicases catalyze the ATP-dependent destabilization of RNA duplexes. DEAD-box helicases share a helicase core that mediates ATP binding and hydrolysis, RNA binding and unwinding. Most members of this family contain domains flanking the core that can confer RNA substrate specificity and guide the helicase to a specific RNA. However, the in vivo RNA substrates of most helicase are currently not defined. more...

Organism:: Thermus thermophilus HB27

Type:: Expression profiling by high throughput sequencing

Platform:: GPL27012
8 Samples

Download data: BED, BW

Series

Accession:: GSE135435

ID:: 200135435

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000527926.

mRNA expression in RNase deletion mutants of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of RNase deletion strains of Thermus thermophils HB8. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
81 Samples

Download data: CEL

Series

Accession:: GSE52792

ID:: 200052792

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000314637.

Differential expression analysis between litR (TTHB100) deletion mutant and wild-type of Thermus thermophilus HB8 under the dark condition.

(Submitter supplied) We observed the expression profile of the total mRNA of litR (TTHB100) deletion mutant of T. thermophilus HB8 strain grown in a rich (TM) medium at 60 °C under the dark condition compared with that of wild-type.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
6 Samples

Download data: CEL

Series

Accession:: GSE31463

ID:: 200031463

Select item 2000339858.

Expression data from Thermus thermophilus HB8 wild type and TTHA1559 disrupted

(Submitter supplied) We observed the expression profile of the total mRNA of wild-type and TTHA1559 disrupted Thermus thermophilus HB8 strain at 70°C.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
6 Samples

Download data: CEL, CHP

Series

Accession:: GSE33985

ID:: 200033985

Analyze with GEO2R

Select item 2000527389.

Thermus thermophilus HB27 WT vs HB27Δago RNAseq

(Submitter supplied) raw RNAseq data from mid-log phase Thermus thermophilus HB27 WT and HB27Δago RNA

Organism:: Thermus thermophilus HB27

Type:: Expression profiling by high throughput sequencing

Platform:: GPL17995
6 Samples

Download data: TXT

Series

Accession:: GSE52738

ID:: 200052738

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20004686810.

Differential expression analysis of T. thermophilus HB8 wild-type strain in response to addition of silicic acid and removal of iron.

(Submitter supplied) We observed the expression profile of the total mRNA in Thermus thermophilus HB8 wild-type strain at 60 min after the addition of silicic acid and removal of iron.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
9 Samples

Download data: CEL, CHP

Series

Accession:: GSE46868

ID:: 200046868

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003690911.

Comparative expression analysis between PfmR (TTHB023) deletion mutant and wild-type of Thermus thermophilus HB8

(Submitter supplied) We observed the expression profile of the total mRNA of PfmR (TTHB023) deletion mutant of Thermus thermophilus HB8 strain grown in a rich (TT) medium at 70°C compared with that of wild type.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
10 Samples

Download data: CEL

Series

Accession:: GSE36909

ID:: 200036909

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003688412.

Expression profile of wild-type Thermus thermophilus HB8 strain cultured in TT medium for 6 h, reproduced in 2011

(Submitter supplied) We observed the expression profile of the total mRNA of the wild-type strain grown in a rich medium at 70 deg-C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
4 Samples

Download data: CEL

Series

Accession:: GSE36884

ID:: 200036884

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003688313.

Expression profile of wild-type Thermus thermophilus HB8 strain cultured in TT medium for 6 h, reproduced in 2010

(Submitter supplied) We observed the expression profile of the total mRNA of the wild-type strain grown in a rich medium at 70 deg-C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE36883

ID:: 200036883

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003688114.

Expression profile of PfmR (TTHB023)-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of PfmR protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the PfmR-deficient strain grown in a rich medium at 70°C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE36881

ID:: 200036881

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20003691215.

SuperSeries for the study of expression analysis of the PfmR (TTHB023) in T. thermophilus HB8

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
40 Samples

Download data: CEL

Series

Accession:: GSE36912

ID:: 200036912

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002781816.

mRNA expression under alkylating condition in wild-type strain and ttha1564 deletion mutant of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of wild-type strain and ttha1564 deletion mutant strain of Thermus thermophils HB8 under alkylating condition. In wild type strain, 107 genes and 96 genes were over 2-fold up- and under 0.5-fold down-regulated by alkylation, respectively. In ttha1564 deletion mutant, 35 genes and 12 genes were over 2-fold up- and under 0.5-fold down-regulated by alkylation, respectively. more...

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
12 Samples

Download data: CEL

Series

Accession:: GSE27818

ID:: 200027818

Select item 20003432817.

A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs

(Submitter supplied) The CRISPR-Cas system represents an RNA-based adaptive immune response system in prokaryotes. CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats) consist of arrays of short repeat sequences interspaced by non-repetitive short spacers, some of which show sequence similarity to foreign phage genetic elements. Their cistronic transcripts are processed to produce the mature CRISPR RNAs (crRNAs), the elements that confer immunity by base-pairing with exogenous nucleic acids. more...

Organism:: Thermus thermophilus

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL14992 GPL14993
6 Samples

Download data: TXT

Series

Accession:: GSE34328

ID:: 200034328

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 20002256718.

Transcription profile of T. thermophilus HB8 strain lacking mutS, mutL, or mutS2 gene

(Submitter supplied) We analyzed the expression profile of mutS, mutL, or mutS2 deletion mutant strain of Thermus thermophils HB8 during the exponential growth phase. When compared with wild type using t-test (P < 0.01), 8, 111, and 18 genes were over 2-fold up-regulated in mutS, mutL, and mutS2-lacking strains, respectively. Keywords: cell type comparison This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
12 Samples

Download data: CEL

Series

Accession:: GSE22567

ID:: 200022567

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002235019.

mRNA expression in mutS deletion mutant of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of mutS deletion mutant strain of Thermus thermophils HB8 during the exponential growth phase. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
6 Samples

Download data: CEL

Series

Accession:: GSE22350

ID:: 200022350

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 20002234920.

mRNA expression in mutS2 deletion mutant of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of mutS2 deletion mutant strain of Thermus thermophils HB8 during the exponential growth phase. Keywords: cell type comparison