GEO DataSets

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Citrus unshiu

Type:

Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing

Platform:

GPL32252

4 Samples

Download data: TXT

(Submitter supplied) The changes of golbal DNA methylation level are relative to phenotypes transition of plant, expecially during producetive growth program. Therefore, we detect the grolbal DNA methlation and transcription level of stems after LD treated and CK group to compare the DNA methylomes difference between CK and LD group. The increase in DNA methylation level of LD group was correlated with decreased expression of DNA demethylase genes.There was a strong negative correlation between the genes expression level and methylation level of the flowering induction/flower development genes.

Organism:

Citrus unshiu

Type:

Methylation profiling by high throughput sequencing

Platform:

GPL32252

2 Samples

Download data: TXT

(Submitter supplied) To investigate the cooperation of light drought with flower branches building and flower bud formation in Citrus, we set two groups including 75 days light drought (LD) and CK to uncover which target genes relatived to flower bud and branches building have been influenced by LD. We then performed gene expression profiling analysis using data obtained from RNA-seq of two different treatment.

Organism:

Citrus unshiu

Type:

Expression profiling by high throughput sequencing

Platform:

GPL32252

2 Samples

Download data: TXT

(Submitter supplied) Roughing disorder (RD) is a significant quality barrier in citrus fruit, occurring more easily on easy-peeling mandarins. As RD is not yet well understood, this study aimed to examine the changes and synergic molecular processes involved. Peel with RD was induced by severely defruiting Satsuma mandarin trees. Morphology observations, RNA-sequencing and untargeted and targeted metabolic analyses were conducted.

Organism:

Citrus unshiu

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23627

6 Samples

Download data: TXT

(Submitter supplied) To future examine more globally genes that may be responsive to CsFUS3 accumulation, we used RNA-seq to compare the transcriptome profiles of the overexpression line with that of empty vector line at two representative time points during SE. After removing low-quality reads, about 13 million reads per sample were mapped against sweet orange reference genome. Using FDR≤0.001 and Abs [log(fold-change)] ≥1 as a selection threshold, a total of 329 genes were found differentially expressed in the CsFUS3 OE line after 6 weeks of induction, including 227 up-regulated and 102 down-regulated genes. more...

Organism:

Citrus unshiu

Type:

Expression profiling by high throughput sequencing

Platform:

GPL20237

8 Samples

Download data: GFF3, XLS

(Submitter supplied) The postharvest senescence processes of citrus fruits were analyzed transcriptomic. The present study was aimed to: further uncover the rind-flesh communication of hesperidium; characterize the differential storage behaviors of different citrus varieties; reveal the important changes during storing process; and demonstrate the specific non-climacteric characteristics of citrus fruits.

Organism:

Citrus sinensis; Citrus reticulata; Citrus maxima; Citrus unshiu

Type:

Expression profiling by array

Platform:

GPL5731

96 Samples

Download data: CEL