txid646099[Organism] - GEO DataSets

(Submitter supplied) Antibiotic resistance genes expressed in the upper respiratory tract of patients infected with influenza viruses were associated with the microbial community and microbial activities. Interactions between the host systemic responses to influenza infection and ARG expression highlight the importance of antibiotic resistance in viral-bacterial co-infection.

Organism:: human metagenome

Type:: Expression profiling by high throughput sequencing

Platform:: GPL26213
35 Samples

Download data: TXT

Series

Accession:: GSE126901

ID:: 200126901

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001269005.

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [16s rRNA gene V4 region]

Organism:: human metagenome

Type:: Other

Platform:: GPL26212
34 Samples

Download data: HDF5

Series

Accession:: GSE126900

ID:: 200126900

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2001116486.

Microbial signatures in prostate cancer

(Submitter supplied) Investigationg microbiome specifically associated with prostate cancer compared to non-cancerous prostate controls.

Organism:: Homo sapiens; human metagenome

Type:: Other

Platform:: GPL24718
53 Samples

Download data: TXT, XLS

Series

Accession:: GSE111648

ID:: 200111648

PubMed Full text in PMC Similar studies

Select item 2000861627.

HuMiChip2 for Strain Level Identification and Functional Profiling of Human Microbiomes

(Submitter supplied) HuMiChip2 was applied to analyze perform both strain-level identification and the functional profiling of human gut microbiomes from alcoholic cirrhosis patients and healthy individuals with alcohol abuse.

Organism:: human metagenome

Type:: Other

Platform:: GPL22376
18 Samples

Download data: TXT

Series

Accession:: GSE86162

ID:: 200086162

PubMed Similar studies

Select item 2000542908.

HuMiChip analysis of 86 samples from different body sites

(Submitter supplied) HuMiChip was used to analyze human oral and gut microbiomes, showing significantly different functional gene profiles between oral and gut microbiome.

Organism:: human metagenome

Type:: Other

Platform:: GPL18196
86 Samples

Download data: EXP

Series

Accession:: GSE54290

ID:: 200054290

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000498759.

HuMiChip analysis of Saliva microbiota

(Submitter supplied) Human saliva microbiota is phylogenetically divergent among host individuals yet their roles in health and disease are poorly appreciated. We employed a microbial functional gene microarray, HuMiChip 1.0, to reconstruct the global functional profiles of human saliva microbiota from ten healthy and ten caries-active adults. Saliva microbiota in the pilot population featured a vast diversity of functional genes. more...

Organism:: human oral metagenome; human metagenome

Type:: Genome variation profiling by array

Platform:: GPL17575
20 Samples

Download data: EXP

Series

Accession:: GSE49875

ID:: 200049875

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 10003426210.

Sequel (human metagenome)

Organism:: human metagenome

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Platform

Accession:: GPL34262

ID:: 100034262

Select item 10002968011.

UPenn PathoChip v5_086327_D_F_20200313

(Submitter supplied) PathoChIP contains sequences that are unique, conserved and frequently mutated across various regions of the SARS-CoV-2 genome. This PathoChip (V5) contains 60,000 probes and represents all known viruses, including SARS-CoV-2, and pathogenic microbes that comprise 250 helminths, 130 protozoa, 360 fungi, and 320 bacteria, totaling more than 6,000 accessions. Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:: human metagenome; Severe acute respiratory syndrome coronavirus 2

1 Series
33 Samples

Download data: XLSX

Platform

Accession:: GPL29680

ID:: 100029680

Select item 10002621312.

Illumina HiSeq 2500 (human metagenome)

Organism:: human metagenome

2 Series
35 Samples

Download data

Platform

Accession:: GPL26213

ID:: 100026213

Select item 10002621213.

Illumina MiSeq (human metagenome)

Organism:: human metagenome

2 Series
34 Samples

Download data

Platform

Accession:: GPL26212

ID:: 100026212

Select item 10002471814.

Agilent-045251 Human Metagenome PathoChip [Probe Name Version]

(Submitter supplied) PathoChip, a metagenomic array comprising probes for all known micro-organisms in NCBI database. Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:: human metagenome

2 Series
167 Samples

Download data

Platform

Accession:: GPL24718

ID:: 100024718

Select item 10002237615.

Agilent-061991 HumiChip2 Nov 13th 061941

(Submitter supplied) see manufacturer's web site at http://www.agilent.com/

Organism:: human metagenome

1 Series
18 Samples

Download data: TXT

Platform

Accession:: GPL22376

ID:: 100022376

Select item 10001819616.

Nimblegen human microbiome HuMiChip V1.0

(Submitter supplied) see manufacturer's web site www.nimblegen.com Microbial ecological functional gene array targeting 139 gene families that play important roles in various pathways

Organism:: human metagenome

1 Series
86 Samples

Download data: NDF

Platform

Accession:: GPL18196

ID:: 100018196

Select item 10001757517.

NimbleGen human oral metagenome array [HuMiChip V1.0]

(Submitter supplied) Microbial ecological functional gene array targeting 139 gene families that play important roles in various pathways The array originally targeted microbial sequences from several different human body, however, the current platform data table represents the oral microbial portion. Since this is a functional gene array designed from some draft bacterial genomes and metagenomes, standard sequence identifier numbers for most of them are not available at the time the probes were designed. more...