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Cfap99 cilia and flagella associated protein 99 [ Mus musculus (house mouse) ]

Gene ID: 100862066, updated on 4-Jan-2025

Summary

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Official Symbol
Cfap99provided by MGI
Official Full Name
cilia and flagella associated protein 99provided by MGI
Primary source
MGI:MGI:5434801
See related
Ensembl:ENSMUSG00000109572 AllianceGenome:MGI:5434801
Gene type
protein coding
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm21446
Summary
Orthologous to human CFAP99 (cilia and flagella associated protein 99). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in testis adult (RPKM 4.1), lung adult (RPKM 0.4) and 3 other tissues See more
Orthologs
human all
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Genomic context

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See Cfap99 in Genome Data Viewer
Location:
5 B2; 5
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (34441107..34486205)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (34286727..34328861)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene DNA polymerase N Neighboring gene STARR-positive B cell enhancer ABC_E1299 Neighboring gene STARR-seq mESC enhancer starr_12836 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:34530746-34530855 Neighboring gene predicted gene, 25918 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:34537815-34537924 Neighboring gene HAUS augmin-like complex, subunit 3 Neighboring gene Max dimerization protein 4 Neighboring gene zinc finger, FYVE domain containing 28 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:34575558-34575759 Neighboring gene RIKEN cDNA A830049F12 gene Neighboring gene STARR-positive B cell enhancer ABC_E668 Neighboring gene predicted gene 5553 Neighboring gene STARR-positive B cell enhancer ABC_E6320 Neighboring gene ring finger protein 4 Neighboring gene family with sequence homology 193, member A Neighboring gene predicted gene, 57744

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

General protein information

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Preferred Names
cilia- and flagella-associated protein 99

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370805.1 → NP_001357734.1  cilia- and flagella-associated protein 99

    Status: INFERRED

    Source sequence(s)
    AC104889
    Consensus CDS
    CCDS89906.1
    UniProtKB/TrEMBL
    A0A140LIX9
    Related
    ENSMUSP00000146999.2, ENSMUST00000207754.2
    Conserved Domains (1) summary
    COG1196
    Location:313 → 637
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    34441107..34486205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006504218.5 → XP_006504281.1  cilia- and flagella-associated protein 99 isoform X1

    See identical proteins and their annotated locations for XP_006504281.1

    UniProtKB/TrEMBL
    A0A140LIX9
    Conserved Domains (1) summary
    COG1196
    Location:313 → 637
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_017321200.3 → XP_017176689.1  cilia- and flagella-associated protein 99 isoform X1

    UniProtKB/TrEMBL
    A0A140LIX9
    Conserved Domains (1) summary
    COG1196
    Location:313 → 637
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_006504221.5 → XP_006504284.1  cilia- and flagella-associated protein 99 isoform X3

    See identical proteins and their annotated locations for XP_006504284.1

    Conserved Domains (1) summary
    pfam05262
    Location:312 → 494
    Borrelia_P83; Borrelia P83/100 protein

  4. XM_011240807.4 → XP_011239109.1  cilia- and flagella-associated protein 99 isoform X6

    See identical proteins and their annotated locations for XP_011239109.1

    Conserved Domains (1) summary
    COG1196
    Location:313 → 436
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  5. XM_011240808.4 → XP_011239110.1  cilia- and flagella-associated protein 99 isoform X7

    See identical proteins and their annotated locations for XP_011239110.1

  6. XM_011240806.2 → XP_011239108.1  cilia- and flagella-associated protein 99 isoform X4

    See identical proteins and their annotated locations for XP_011239108.1

    Conserved Domains (1) summary
    pfam05262
    Location:197 → 379
    Borrelia_P83; Borrelia P83/100 protein

  7. XM_006504222.2 → XP_006504285.1  cilia- and flagella-associated protein 99 isoform X5

    See identical proteins and their annotated locations for XP_006504285.1

    Conserved Domains (1) summary
    pfam05262
    Location:166 → 348
    Borrelia_P83; Borrelia P83/100 protein

  8. XM_006504220.3 → XP_006504283.1  cilia- and flagella-associated protein 99 isoform X2

    See identical proteins and their annotated locations for XP_006504283.1

    Conserved Domains (1) summary
    COG1196
    Location:259 → 583
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version

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