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Sgtb small glutamine rich tetratricopeptide repeat co-chaperone beta [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101711261, updated on 3-Dec-2024

Summary

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Gene symbol
Sgtb
Gene description
small glutamine rich tetratricopeptide repeat co-chaperone beta
Locus tag
GW7_09269
See related
Ensembl:ENSHGLG00000004522
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Sgtb in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624815.1 (4162308..4211078)

NW_004624815.1Genomic Context describing neighboring genes Neighboring gene neurolysin Neighboring gene hepatoma-derived growth factor-related protein 3 pseudogene Neighboring gene dnaJ homolog subfamily B member 6-like Neighboring gene trafficking protein particle complex subunit 13 Neighboring gene tripartite motif containing 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624815 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-translational protein targeting to endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small glutamine-rich tetratricopeptide repeat-containing protein beta
Names
Small glutamine-rich tetratricopeptide repeat-containing protein beta
small glutamine rich tetratricopeptide repeat containing beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624815.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    4162308..4211078
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004862863.3 → XP_004862920.1  small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1

    See identical proteins and their annotated locations for XP_004862920.1

    UniProtKB/TrEMBL
    G5B0E9
    Conserved Domains (4) summary
    sd00006
    Location:85 → 113
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:153 → 186
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:84 → 149
    TPR_11; TPR repeat
    pfam16546
    Location:7 → 64
    SGTA_dimer; Homodimerization domain of SGTA

  2. XM_004862864.3 → XP_004862921.1  small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X1

    See identical proteins and their annotated locations for XP_004862921.1

    UniProtKB/TrEMBL
    G5B0E9
    Related
    ENSHGLP00000006188.1, ENSHGLT00000006264.1
    Conserved Domains (4) summary
    sd00006
    Location:85 → 113
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:153 → 186
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:84 → 149
    TPR_11; TPR repeat
    pfam16546
    Location:7 → 64
    SGTA_dimer; Homodimerization domain of SGTA

  3. XM_004862866.3 → XP_004862923.1  small glutamine-rich tetratricopeptide repeat-containing protein beta isoform X2

    UniProtKB/TrEMBL
    A0AAX6Q1H9
    Conserved Domains (4) summary
    sd00006
    Location:85 → 113
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:153 → 186
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:84 → 149
    TPR_11; TPR repeat
    pfam16546
    Location:7 → 64
    SGTA_dimer; Homodimerization domain of SGTA
Nucleotide Protein
Heading Accession and Version

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