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LOC101883779 zinc finger protein 436 [ Danio rerio (zebrafish) ]

Gene ID: 101883779, updated on 12-Sep-2024

Summary

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Gene symbol
LOC101883779
Gene description
zinc finger protein 436
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC101883779 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (61589982..61596203, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (60905977..60911502, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene Z30 small nucleolar RNA Neighboring gene peroxisomal biogenesis factor 12 Neighboring gene uncharacterized LOC137495650 Neighboring gene draculin-like, tandem duplicate 3 Neighboring gene draculin-like, tandem duplicate 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
zinc finger protein 436

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    61589982..61596203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165571.5 → XP_005165628.1  zinc finger protein 436

    See identical proteins and their annotated locations for XP_005165628.1

    UniProtKB/TrEMBL
    A0A8M9PLJ1
    Conserved Domains (2) summary
    COG5048
    Location:84 → 300
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:84 → 104
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_021476662.2 → XP_021332337.1  zinc finger protein 436

    UniProtKB/TrEMBL
    A0A8M9PLJ1
    Conserved Domains (2) summary
    COG5048
    Location:84 → 300
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:84 → 104
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
Heading Accession and Version

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