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paxip1 PAX interacting (with transcription-activation domain) protein 1 [ Alosa sapidissima (American shad) ]

Gene ID: 121691784, updated on 12-Sep-2024

Summary

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Gene symbol
paxip1
Gene description
PAX interacting (with transcription-activation domain) protein 1
See related
EnsemblRapid:ENSASDG00000028182
Gene type
protein coding
RefSeq status
MODEL
Organism
Alosa sapidissima
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Alosa
Orthologs
human zebrafish all
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Genomic context

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See paxip1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
100 current fAloSap1.pri (GCF_018492685.1) 1 NC_055957.1 (52409358..52437960)

Chromosome 1 - NC_055957.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121694859 Neighboring gene canopy FGF signaling regulator 1 Neighboring gene engrailed homeobox 2b Neighboring gene sickle tail protein Neighboring gene uncharacterized LOC121694900 Neighboring gene chromosome 1 C10orf67 homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_055957.1 Chromosome 1 Reference fAloSap1.pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of transcription initiation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PAX-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Alosa sapidissima Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fAloSap1.pri Primary Assembly

Genomic

  1. NC_055957.1 Reference fAloSap1.pri Primary Assembly

    Range
    52409358..52437960
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042071191.1 → XP_041927125.1  PAX-interacting protein 1 isoform X2

    Conserved Domains (4) summary
    cd17710
    Location:98 → 177
    BRCT_PAXIP1_rpt2; second BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
    cd17711
    Location:705 → 786
    BRCT_PAXIP1_rpt3; third BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
    cd17714
    Location:13 → 87
    BRCT_PAXIP1_rpt1; first (N-terminal) BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
    cd17730
    Location:806 → 878
    BRCT_PAXIP1_rpt4; fourth BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins

  2. XM_042071190.1 → XP_041927124.1  PAX-interacting protein 1 isoform X1

    Related
    ENSASDP00000054020.1, ENSASDT00000046621.1
    Conserved Domains (6) summary
    cd17710
    Location:98 → 177
    BRCT_PAXIP1_rpt2; second BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
    cd17711
    Location:705 → 786
    BRCT_PAXIP1_rpt3; third BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
    cd17712
    Location:962 → 1036
    BRCT_PAXIP1_rpt5; fifth BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
    cd17714
    Location:13 → 87
    BRCT_PAXIP1_rpt1; first (N-terminal) BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
    cd17730
    Location:806 → 878
    BRCT_PAXIP1_rpt4; fourth BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
    cd18440
    Location:1068 → 1158
    BRCT_PAXIP1_rpt6; sixth BRCT domain of PAX-interacting protein 1 (PAXIP1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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