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Y48G1C.6 HTH CENPB-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 171597, updated on 4-Jan-2025

Summary

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Official Symbol
Y48G1C.6
Official Full Name
HTH CENPB-type domain-containing protein
Primary source
WormBase:WBGene00021679
Locus tag
CELE_Y48G1C.6
See related
AllianceGenome:WB:WBGene00021679
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Orthologous to human POGK (pogo transposable element derived with KRAB domain). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y48G1C.6 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (83992..86293, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Tyrosine-protein phosphatase domain-containing protein Neighboring gene Serine-threonine/tyrosine-protein kinase catalytic domain-containing protein;Tyrosine-protein kinase csk-1 Neighboring gene Myotubularin phosphatase domain-containing protein Neighboring gene Sm domain-containing protein Neighboring gene Chitin-binding type-2 domain-containing protein Neighboring gene Protein pid-2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
HTH CENPB-type domain-containing protein
NP_490670.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    83992..86293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058269.4 → NP_490670.1  HTH CENPB-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_490670.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N3P2
    Conserved Domains (2) summary
    smart00674
    Location:80 → 142
    CENPB; Putative DNA-binding domain in centromere protein B, mouse jerky and transposases
    pfam13518
    Location:21 → 79
    HTH_28; Helix-turn-helix domain
Nucleotide Protein
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