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tasp-1 TASPase homolog [ Caenorhabditis elegans ]

Gene ID: 176508, updated on 2-Nov-2024

Summary

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Official Symbol
tasp-1
Official Full Name
TASPase homolog
Primary source
WormBase:WBGene00010480
Locus tag
CELE_K01G5.9
See related
AllianceGenome:WB:WBGene00010480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable threonine-type endopeptidase activity. Predicted to be involved in protein maturation. Predicted to be active in cytoplasm. Orthologous to human TASP1 (taspase 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tasp-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
9
Sequence:
Chromosome: III; NC_003281.10 (10759385..10763006)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene putative E3 ubiquitin-protein ligase rnf113 Neighboring gene Haloacid dehalogenase-like hydrolase domain-containing protein 3 Neighboring gene Condensin complex subunit 1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Strategy To Isolate Modifiers of Caenorhabditis elegans Lethal Mutations: Investigating the Endoderm Specifying Ability of the Intestinal Differentiation GATA Factor ELT-2. Wiesenfahrt T, et al. G3 (Bethesda), 2018 May 4. PMID 29593072, Free PMC Article
  2. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
  3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables threonine-type endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein maturation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
TASPase homolog
NP_001379234.1
  • Confirmed by transcript evidence;
    Product from WormBase gene class tasp

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    10759385..10763006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001392207.1 → NP_001379234.1  TASPase homolog [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EF83
    Conserved Domains (1) summary
    cd04514
    Location:5 → 304
    Taspase1_like; Taspase 1 (threonine aspartase 1) and similar proteins
Nucleotide Protein
Heading Accession and Version

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