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Slc5a2 solute carrier family 5 (sodium/glucose cotransporter), member 2 [ Mus musculus (house mouse) ]

Gene ID: 246787, updated on 27-Nov-2024

Summary

Official Symbol
Slc5a2provided by MGI
Official Full Name
solute carrier family 5 (sodium/glucose cotransporter), member 2provided by MGI
Primary source
MGI:MGI:2181411
See related
Ensembl:ENSMUSG00000030781 AllianceGenome:MGI:2181411
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Sglt2
Summary
Predicted to enable D-glucose:sodium symporter activity and alpha-glucoside transmembrane transporter activity. Involved in renal D-glucose absorption. Located in apical plasma membrane. Is expressed in urinary system. Human ortholog(s) of this gene implicated in renal glycosuria. Orthologous to human SLC5A2 (solute carrier family 5 member 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in kidney adult (RPKM 372.3) and adrenal adult (RPKM 11.1) See more
Orthologs
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Genomic context

See Slc5a2 in Genome Data Viewer
Location:
7 F3; 7 70.08 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (127864855..127871602)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (128265683..128272430)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:135380811-135380920 Neighboring gene STARR-positive B cell enhancer ABC_E2253 Neighboring gene STARR-positive B cell enhancer ABC_E8212 Neighboring gene zinc finger protein 696 Neighboring gene armadillo repeat containing 5 Neighboring gene transforming growth factor beta 1 induced transcript 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:135396171-135396397 Neighboring gene RUS family member 1 Neighboring gene microRNA 3103 Neighboring gene alpha hemoglobin stabilizing protein

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables D-glucose transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables D-glucose:sodium symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables D-glucose:sodium symporter activity ISO
Inferred from Sequence Orthology
more info
 
enables D-glucose:sodium symporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 
enables alpha-glucoside transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
enables alpha-glucoside transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in D-glucose import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 
involved_in D-glucose import across plasma membrane ISO
Inferred from Sequence Orthology
more info
 
involved_in D-glucose transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
involved_in alpha-glucoside transport IEA
Inferred from Electronic Annotation
more info
 
involved_in alpha-glucoside transport ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of urine volume ISO
Inferred from Sequence Orthology
more info
 
involved_in renal D-glucose absorption IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in renal potassium excretion ISO
Inferred from Sequence Orthology
more info
 
involved_in sodium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 
involved_in sodium ion import across plasma membrane ISO
Inferred from Sequence Orthology
more info
 
involved_in sodium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in apical plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in brush border membrane ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
sodium/glucose cotransporter 2
Names
Na(+)/glucose cotransporter 2
low affinity sodium-dependent glucose cotransporter

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133254.5NP_573517.1  sodium/glucose cotransporter 2

    See identical proteins and their annotated locations for NP_573517.1

    Status: VALIDATED

    Source sequence(s)
    AC124566
    Consensus CDS
    CCDS21894.1
    UniProtKB/Swiss-Prot
    Q923I7
    Related
    ENSMUSP00000112597.2, ENSMUST00000118169.8
    Conserved Domains (1) summary
    cl00456
    Location:22670
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    127864855..127871602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)