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rfp2 SUMO-targeted ubiquitin-protein ligase subunit Rfp2 [ Schizosaccharomyces pombe (fission yeast) ]

Gene ID: 2543192, updated on 18-Sep-2024

Summary

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Official Symbol
rfp2
Official Full Name
SUMO-targeted ubiquitin-protein ligase subunit Rfp2
Primary source
PomBase:SPAC343.18
Locus tag
SPOM_SPAC343.18
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Schizosaccharomyces pombe (strain: 972h-)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See rfp2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003424.3 (1680168..1681471)

Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein Neighboring gene tRNA isopentenyltransferase Neighboring gene homoaconitate hydratase Lys2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 1-phosphatidylinositol 4-kinase Lsb6 Neighboring gene GPI inositol deacylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003424.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Conserved function of RNF4 family proteins in eukaryotes: targeting a ubiquitin ligase to SUMOylated proteins. Sun H, et al. EMBO J, 2007 Sep 19. PMID 17762864, Free PMC Article
  2. Fission yeast Rnf4 homologs are required for DNA repair. Kosoy A, et al. J Biol Chem, 2007 Jul 13. PMID 17502373
  3. The nuclear pore primes recombination-dependent DNA synthesis at arrested forks by promoting SUMO removal. Kramarz K, et al. Nat Commun, 2020 Nov 6. PMID 33159083, Free PMC Article
  4. SUMO-targeted ubiquitin ligases in genome stability. Prudden J, et al. EMBO J, 2007 Sep 19. PMID 17762865, Free PMC Article
  5. SUMO-Targeted DNA Translocase Rrp2 Protects the Genome from Top2-Induced DNA Damage. Wei Y, et al. Mol Cell, 2017 Jun 1. PMID 28552615

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by PomBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
NOT enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding ISM
Inferred from Sequence Model
more info
  
Process Evidence Code Pubs
involved_in DNA repair IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in stalled replication fork localization to nuclear periphery IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
part_of SUMO-targeted ubiquitin ligase complex IPI
Inferred from Physical Interaction
more info
 PubMed 
is_active_in nucleus HDA PubMed 
is_active_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SUMO-targeted ubiquitin-protein ligase subunit Rfp2

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003424.3 Reference assembly

    Range
    1680168..1681471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001018872.3 → NP_593439.1  SUMO-targeted ubiquitin-protein ligase subunit Rfp2 [Schizosaccharomyces pombe]

    See identical proteins and their annotated locations for NP_593439.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q9UT72
    Conserved Domains (1) summary
    pfam14634
    Location:147 → 193
    zf-RING_5; zinc-RING finger domain
Nucleotide Protein
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