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BC031181 cDNA sequence BC031181 [ Mus musculus (house mouse) ]

Gene ID: 407819, updated on 27-Nov-2024

Summary

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Official Symbol
BC031181provided by MGI
Official Full Name
cDNA sequence BC031181provided by MGI
Primary source
MGI:MGI:3039614
See related
Ensembl:ENSMUSG00000036299 AllianceGenome:MGI:3039614
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in endoplasmic reticulum and lipid droplet. Is expressed in central nervous system and retina. Orthologous to human C18orf32 (chromosome 18 open reading frame 32). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E14 (RPKM 40.0), CNS E18 (RPKM 39.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See BC031181 in Genome Data Viewer
Location:
18 E3; 18 50.96 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75138910..75143006)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (75005839..75009935)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7609 Neighboring gene STARR-positive B cell enhancer ABC_E7610 Neighboring gene predicted gene, 23301 Neighboring gene predicted gene, 26202 Neighboring gene ribosomal protein L17 Neighboring gene dymeclin Neighboring gene STARR-seq mESC enhancer starr_45027 Neighboring gene predicted gene, 52344 Neighboring gene ATP synthase subunit d, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
  2. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
  3. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
located_in endoplasmic reticulum ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in lipid droplet ISO
Inferred from Sequence Orthology
more info
  
located_in lipid droplet ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
UPF0729 protein C18orf32 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001181.4 → NP_001001181.1  UPF0729 protein C18orf32 homolog isoform 1

    See identical proteins and their annotated locations for NP_001001181.1

    Status: VALIDATED

    Source sequence(s)
    BC016084, BY129096, BY512913
    Consensus CDS
    CCDS37859.1
    UniProtKB/Swiss-Prot
    Q3V3U8, Q91WE4
    Related
    ENSMUSP00000158256.2, ENSMUST00000237263.2
    Conserved Domains (1) summary
    pfam14975
    Location:2 → 42
    DUF4512; Domain of unknown function (DUF4512)

  2. NM_001358303.1 → NP_001345232.1  UPF0729 protein C18orf32 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AK077642, BY129096, BY512913
    Consensus CDS
    CCDS37859.1
    UniProtKB/Swiss-Prot
    Q3V3U8, Q91WE4
    Related
    ENSMUSP00000040450.5, ENSMUST00000040284.6
    Conserved Domains (1) summary
    pfam14975
    Location:2 → 42
    DUF4512; Domain of unknown function (DUF4512)

  3. NM_001358304.1 → NP_001345233.1  UPF0729 protein C18orf32 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    BY129096, BY512913, CK620827
    Consensus CDS
    CCDS37859.1
    UniProtKB/Swiss-Prot
    Q3V3U8, Q91WE4
    Related
    ENSMUSP00000157657.2, ENSMUST00000236421.2
    Conserved Domains (1) summary
    pfam14975
    Location:2 → 42
    DUF4512; Domain of unknown function (DUF4512)

  4. NM_001358305.1 → NP_001345234.1  UPF0729 protein C18orf32 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC125122
    Consensus CDS
    CCDS37859.1
    UniProtKB/Swiss-Prot
    Q3V3U8, Q91WE4
    Conserved Domains (1) summary
    pfam14975
    Location:2 → 42
    DUF4512; Domain of unknown function (DUF4512)

  5. NM_001358306.1 → NP_001345235.1  UPF0729 protein C18orf32 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC125122
    Conserved Domains (1) summary
    pfam14975
    Location:25 → 65
    DUF4512; Domain of unknown function (DUF4512)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    75138910..75143006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91WE4.1 GenPept UniProtKB/Swiss-Prot:Q91WE4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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