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ADAMTS20 ADAM metallopeptidase with thrombospondin type 1 motif 20 [ Gallus gallus (chicken) ]

Gene ID: 417794, updated on 17-Aug-2024

Summary

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Symbol
ADAMTS20provided by CGNC
Full Name
ADAM metallopeptidase with thrombospondin type 1 motif 20provided by CGNC
Primary source
CGNC:7287
See related
Ensembl:ENSGALG00010001858
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See ADAMTS20 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
39
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (30063860..30148435, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (30401700..30486357, complement)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene periphilin 1 Neighboring gene microRNA 7447 Neighboring gene uncharacterized LOC121106849 Neighboring gene prickle planar cell polarity protein 1 Neighboring gene uncharacterized LOC124417300 Neighboring gene basic proline-rich protein-like Neighboring gene pseudouridylate synthase 7 like Neighboring gene interleukin 1 receptor associated kinase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    30063860..30148435 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015282468.4 → XP_015137954.2  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XD62
    Conserved Domains (3) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:716 → 834
    ADAM_spacer1; ADAM-TS Spacer 1

  2. XM_015282450.4 → XP_015137936.2  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XD62
    Conserved Domains (3) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:719 → 826
    ADAM_spacer1; ADAM-TS Spacer 1

  3. XM_015282451.4 → XP_015137937.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XD62
    Conserved Domains (6) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:253 → 462
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:64 → 176
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:716 → 834
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08685
    Location:1642 → 1838
    GON; GON domain

  4. XM_015282444.4 → XP_015137930.2  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X1

    UniProtKB/TrEMBL
    A0A8V0X7B5, A0A8V0XD62
    Related
    ENSGALP00010002521.1, ENSGALT00010004224.1
    Conserved Domains (3) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:716 → 834
    ADAM_spacer1; ADAM-TS Spacer 1

  5. XM_025154135.3 → XP_025009903.2  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XAF3, A0A8V0XD62
    Related
    ENSGALP00010002519.1, ENSGALT00010004222.1
    Conserved Domains (3) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:716 → 834
    ADAM_spacer1; ADAM-TS Spacer 1

RNA

  1. XR_003077126.3 RNA Sequence

  2. XR_003077121.3 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    30401700..30486357 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040658954.2 → XP_040514888.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XD62
    Conserved Domains (3) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:716 → 834
    ADAM_spacer1; ADAM-TS Spacer 1

  2. XM_040658952.2 → XP_040514886.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XD62
    Conserved Domains (3) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:719 → 826
    ADAM_spacer1; ADAM-TS Spacer 1

  3. XM_040658953.2 → XP_040514887.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XD62
    Conserved Domains (3) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:716 → 834
    ADAM_spacer1; ADAM-TS Spacer 1

  4. XM_040658951.2 → XP_040514885.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XD62
    Conserved Domains (3) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:716 → 834
    ADAM_spacer1; ADAM-TS Spacer 1

  5. XM_040658955.2 → XP_040514889.1  A disintegrin and metalloproteinase with thrombospondin motifs 20 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XD62
    Conserved Domains (3) summary
    smart00209
    Location:554 → 606
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:253 → 459
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam05986
    Location:716 → 834
    ADAM_spacer1; ADAM-TS Spacer 1

RNA

  1. XR_005844257.2 RNA Sequence

  2. XR_005844256.2 RNA Sequence

Nucleotide Protein Strain
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