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FAM90A7 family with sequence similarity 90 member A7 [ Homo sapiens (human) ]

Gene ID: 441317, updated on 27-Nov-2024

Summary

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Official Symbol
FAM90A7provided by HGNC
Official Full Name
family with sequence similarity 90 member A7provided by HGNC
Primary source
HGNC:HGNC:32255
See related
Ensembl:ENSG00000285975 MIM:613044; AllianceGenome:HGNC:32255
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM90A7P
Summary
FAM90A7 belongs to subfamily II of the primate-specific FAM90A gene family, which originated from multiple duplications and rearrangements (Bosch et al., 2007 [PubMed 17684299]). For background information on the FAM90A gene family, as well as information on the evolution of FAM90A genes, see FAM90A1 (MIM 613041).[supplied by OMIM, Oct 2009]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See FAM90A7 in Genome Data Viewer
Location:
8p23.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (7556700..7559712, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (7276261..7279271, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (7414222..7417234, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene proline rich 23 domain containing 1 Neighboring gene family with sequence similarity 90 member A6, pseudogene Neighboring gene uncharacterized LOC105377800 Neighboring gene putative protein FAM90A9P Neighboring gene family with sequence similarity 90 member A21, pseudogene Neighboring gene family with sequence similarity 90 member A22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Analysis of the multi-copy gene family FAM90A as a copy number variant in different ethnic backgrounds. Bosch N, et al. Gene, 2008 Sep 1. PMID 18602769
  2. Characterization and evolution of the novel gene family FAM90A in primates originated by multiple duplication and rearrangement events. Bosch N, et al. Hum Mol Genet, 2007 Nov 1. PMID 17684299

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Homology

General protein information

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Preferred Names
putative protein FAM90A7
Names
family with sequence similarity 90 member A7, pseudogene
putative protein FAM90A7P

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001397387.1 → NP_001384316.1  putative protein FAM90A7

    Status: PROVISIONAL

    Source sequence(s)
    AC134684
    Consensus CDS
    CCDS47778.1
    UniProtKB/Swiss-Prot
    A6NKC0
    UniProtKB/TrEMBL
    A0AAG2TNX0
    Related
    ENSP00000497076.1, ENST00000650288.1
    Conserved Domains (2) summary
    PHA03247
    Location:25 → 420
    PHA03247; large tegument protein UL36; Provisional
    pfam15288
    Location:41 → 76
    zf-CCHC_6; Zinc knuckle

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    7556700..7559712 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    5358561..5361571
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187570.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    239803..242815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    7276261..7279271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001136572.1: Suppressed sequence

    Description
    NM_001136572.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A6NKC0.1 GenPept UniProtKB/Swiss-Prot:A6NKC0

Gene LinkOut

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Chemical Information
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Research Materials