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APOBEC3G apolipoprotein B mRNA editing enzyme catalytic subunit 3G [ Homo sapiens (human) ]

Gene ID: 60489, updated on 27-Nov-2024

Summary

Official Symbol
APOBEC3Gprovided by HGNC
Official Full Name
apolipoprotein B mRNA editing enzyme catalytic subunit 3Gprovided by HGNC
Primary source
HGNC:HGNC:17357
See related
Ensembl:ENSG00000239713 MIM:607113; AllianceGenome:HGNC:17357
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
A3G; ARCD; ARP9; ARP-9; CEM15; CEM-15; MDS019; bK150C2.7; dJ494G10.1
Summary
This gene is a member of the cytidine deaminase gene family. It is one of seven related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 22. Members of the cluster encode proteins that are structurally and functionally related to the C to U RNA-editing cytidine deaminase APOBEC1. The protein encoded by this gene catalyzes site-specific deamination of both RNA and single-stranded DNA. The encoded protein has been found to be a specific inhibitor of human immunodeficiency virus-1 (HIV-1) infectivity. [provided by RefSeq, Mar 2017]
Expression
Broad expression in lymph node (RPKM 19.7), spleen (RPKM 13.4) and 22 other tissues See more
Orthologs
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Genomic context

See APOBEC3G in Genome Data Viewer
Location:
22q13.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (39077005..39087743)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (39547423..39558159)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (39473010..39483748)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:39437791-39438568 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:39439415-39439645 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3F Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:39445317-39446516 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13739 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:39448525-39449459 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:39458436-39458615 Neighboring gene uncharacterized LOC107985563 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13740 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39465577-39466080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39466081-39466585 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13741 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19028 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19029 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39477470-39477970 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39480765-39481338 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39483746-39484555 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:39484556-39485364 Neighboring gene uncharacterized LOC101927202 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr22:39492371-39493570 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:39493781-39494667 Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3H

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.
EBI GWAS Catalog

HIV-1 interactions

Replication interactions

Interaction Pubs
HIV-1 gRNA binds APOBEC3G and is dependent on tryptophans at APOBEC3G positions 94 and 127; mutations W94A and W127A result in complete loss of HIV-1 restriction and in very low hypermuatation of HIV-1 retroviral sequences from infected target cells PubMed
HIV-1 replication is inhibited by APOBEC3B and APOBEC3G in 293T cells PubMed
HIV-1 replication is inhibited by APOBEC3G expression in transgenic mouse models PubMed
HIV/tuberculosis coinfection upregulates APOBEC3G expression in pleural fluid mononuclear cells (PFMC) isolated from antiretroviral-naive coinfected patients (relative to patients infected with only tuberculosis) PubMed

Protein interactions

Protein Gene Interaction Pubs
Envelope surface glycoprotein gp120 env HIV-1 Env gp120 variable loop 3 (V3) region mutation is increased by incomplete Vif neutralization (Vif K22E) of APOBEC3G/F activity and may contribute to genetic evolution from CCR5 to CXCR4 co-receptor usage PubMed
Envelope surface glycoprotein gp160, precursor env A significant level of APOBEC3G is upregulated when CD4+ T cells are stimulated with HIV-1 gp140 PubMed
Gag-Pol gag-pol Residues N20, R24, L27, R30, Y59, K63, W94, R102, R122, W127, D128, D130, R136, F157, W175, E191 in the APOBEC3G N-terminal cytidine deaminase domain are involved in the interaction with HIV-1 GagPol PubMed
gag-pol Residues Y222, Q237, R238, R239, V265, W269, and K270 in the C-terminal cytidine deaminase domain are involved in the interaction with HIV-1 GagPol PubMed
Pr55(Gag) gag The N-terminus (residues 1-11) of HIV-1 nucleocapsid is critical for HIV-1 Gag and APOBEC3G interaction and virion packaging; the linker region (residues 121-161) of APOBEC3G is also important for efficient packaging into HIV-1 Gag virus like particles PubMed
gag Single-virion fluorescence microscopy analysis demonstrates that the efficiency of A3G-YFP and A3F-YFP incorporation into HIV-1 Gag-CeFP virions is higher than that of A3C-YFP incorporation into HIV-1 Gag-CeFP virions PubMed
gag Prostaglandin A1-treated HIV-1-infected cells induce HSP70 synthesis, which leads to block HIV-1 Vif-mediated A3G degradation and to reduce Gag levels in non-permissive cells PubMed
gag The efficiency of incorporation of Mov10, A3G, and A3F into viral particles, which contains both HIV-1 Gag and genomic RNA, is much higher than that of the other P-body proteins AGO2, DCP1a, DCP2, and DDX6 PubMed
gag Producer cell A3G complexes decrease HIV-1 pseudovirus production and intracellular HIV-1 Gag half-life PubMed
gag HIV-1 Gag co-localizes with A3G complex in cells. C97A A3G mutant is delayed in A3G complex formation compared to the wild type PubMed
gag Transient exposure of Pr(-) viral RNA to NCp7 in vitro returns the quality and quantity of tRNA(3)(Lys) annealing to Pr(+) levels. The presence of A3G prevents this rescue and creates a further reduction in tRNA(3)(Lys) annealing PubMed
gag HIV-1 Gag chimeras formed by replacing HIV-1 nucleocapsid (NC) domain with SARS-CoV nucleocapsid (N) residues 2-213, 215-421, or 234-421 are capable of incorporating large amounts of human APOBEC3G (hA3G) into virus-like particles (VLPs) PubMed
gag The amino-terminal half of A3G, which contains only a single cytidine deaminase domain (CDA), is able to bind to HIV-1 Gag and package into HIV-1 virions PubMed
gag APOBEC3G in exosomes reduces accumulation of HIV-1 reverse transcription products and steady-state levels of HIV-1 Gag and Vif proteins PubMed
gag Overexpression of A3G and Mov10 decreases the efficiency of HIV-1 Gag processing in virus-producing cells PubMed
gag Approximately 7 (+/-4) molecules of A3G are incorporated into Delta-vif virions produced from human PBMCs; this incorporation is mediated by the nucleocapsid domain of HIV-1 Gag PubMed
gag The basic linker region (Gag405-411) of NC is essential for the membrane association of APOBEC3G in a Gag-APOBEC3G complex. APOBEC3G is packaged as a multimer that is bound to packaged RNA PubMed
Vif vif HIV-1 Vif interacts with APOBEC3G PubMed
vif HIV-1 Vif binds APOBEC3G dependent upon amino acids 125, 128, 129, and 130 in APOBEC3G and amino acids 14-17, 19 and 22 in Vif PubMed
vif HIV-1 Vif degrades APOBEC3G dependent upon amino acids 125, 128, 129, and 130 in APOBEC3G and amino acids 14-17, 19 and 22 in Vif PubMed
vif HIV-1 Vif degrades APOBEC3G in HEK 293T cells PubMed
vif HIV-1 Vif antagonizes APOBEC3G restriction of HIV-1 replication in transgenic mouse models; restriction is dependent upon amino acid W11 in Vif PubMed
vif HIV-1 Vif induces polyubiquitination of APOBEC3G (A3G) on lysine residues dispersed throughout the A3G protein PubMed
vif HIV-1 subtype C Vif variants obtained from patients expressing APOBEC3G WT/WT and APOBEC3G H186R/H186R counteract both APOBEC3G variants with similar efficiency PubMed
vif APOBEC3G, also known as CEM15, is a cellular inhibitor of HIV-1 replication which is suppressed by the viral Vif protein PubMed
vif Co-immunoprecipitation assays show that HIV-1 Vif directly binds APOBEC3G to form a complex in vivo that accelerates the degradation of APOBEC3G via the ubiquitin-proteasome pathway PubMed
vif HIV-1 Vif interacts with APOBEC3G as demonstrated by co-immunoprecipitation assay PubMed
vif HIV-1 Vif interacts with endogeneous non-degraded APOBEC3G (and HDAC6) when overexpressed in CEM.NKR.CCR5 cells as demonstrated by co-IP using cell lysates treated with Rnase A (suggesting interaction is direct protein-protein and not tethered by RNA) PubMed
vif HIV-1 Vif complexes with APOBEC3G and HDAC6 to form a ternary complex as demonstrated by co-IP assay using HEK293T cells lysates PubMed
vif HIV-1 Vif binds APOBEC3G as demonstrated by HA-Vif, GST-APOBEC3G pull-down assay PubMed
vif HIV-1 Vif amino acids 25-39 and/or 107-115 (when synthesized as peptides) inhibit the catalytic activity of APOBEC3G PubMed
vif HIV-1 Vif binds an engineered soluble N-terminal pseudo-catalytic (NTD) APOBEC3G domain via a unique Vif-interacting surface formed by alpha1-beta1, beta2-alpha2, and beta4-alpha4 loops PubMed
vif HIV-1 Vif packages APOBEC3G including wild type, W94A and W127A variants PubMed
vif HIV-1 Vif antagonizes APOBEC3G restiction of HIV-1 replication as demonstrated via mathematical modeling PubMed
vif HIV-1 Vif binds to amino acids 54-124 of APOBEC3G and causes its degradation through a proteasome dependent pathway PubMed
vif ASK1 restricts the replication of HIV-1 by inhibiting Vif activity and promoting APOBEC3G incorporation into virions in CD4+ T-cells PubMed
vif ASK1 markedly inhibits HIV-1 Vif-induced ubiquitination of APOBEC3G by a reduction in the Vif-ELOC interaction PubMed
vif ASK1 directly binds HIV-1 Vif and inhibits the anti-APOBEC3G activity by Vif PubMed
vif HIV-1 Vif proteins derived from elite controllers display significantly reduced anti-APOBEC3G activities compared to those from noncontrollers PubMed
vif Small molecular compound benzimidazole derivatives inhibit APOBEC3G degradation by HIV-1 Vif in H9 cells PubMed
vif Rbx1 I44A and Rbx2 I52A mutants disrupt the level of HIV-1 Vif-mediated APOBEC3G degradation in cells PubMed
vif Compound N.41 and its analogs inhibit the Vif-A3G interaction, and increase cellular A3G levels and incorporation of A3G into virions, thereby attenuating virus infectivity in a Vif-dependent manner PubMed
vif UBE2F and RBX2 are required for activation of the polyubiquitin synthesis activity of Vif/CBF-beta/CUL5, leading to HIV-1 Vif-mediated degradation of A3G in cells PubMed
vif CUL5/RBX2/ELOB/ELOC/Vif/CBF-beta complex catalyzes polyubiquitin chain formation on A3G in the presence of ubiquitin E2 UBE2R1 (CDC34) or UBCH5b (UBE2D2) PubMed
vif HIV-1 Vif, CBF-beta, CUL5, and ELOB/C form a complex that is required for Vif-mediated downregulation of A3G and A3F. CBF-beta regulates HIV-1 infectivity only in the presence of A3G PubMed
vif The ability of HIV-1 Vif to suppress the antiviral activity of APOBEC3G is dependent on the function of a Vif-Cul5-SCF complex involving Cul5, elongins B and C, and Rbx1 PubMed
vif Residues N20, R24, L27, R30, Y59, K63, W94, R102, R122, W127, D128, D130, R136, F157, W175, and E191 in the APOBEC3G N-terminal cytidine deaminase domain are involved in the interaction with HIV-1 Vif PubMed
vif HIV-1 Vif mutants carrying mutations or deletions in the conserved HCCH (residues 108-139), SLQ (residues 144-149), and PPLP (residues 161-164) motifs have the ability to dominantly interfere with the wild-type Vif function to inhibit A3G PubMed
vif HIV-1 Vif W21A, S32A, W38A, Y40A, Y69A, H108A, C114S, C133S, and H139A mutants have no viral ability to neutralize APOBEC3G PubMed
vif Mutations in the HIV-1 Vif HCCH motif (residues 108-139), BC box (residues 144-146), and Cul5-box (residues 163-169) result in the reduction of Vif-induced APOBEC3G degradation PubMed
vif Two potent Vif inhibitors RN-18 and VEC5 specifically inhibits HIV-1 Vif-mediated downregulation of APOBEC3C/F/G proteins by decreasing Vif protein levels when Vif interacts with these proteins PubMed
vif HIV-1 Vif mutants 84DVAAAA89, 88EW/AA89, G84A, G84D, W89A, D104A, L106S, and I107S are unable to efficiently degrade APOBEC3G, leading to Vif mutants that can not effectively inhibit the incorporation of APOBEC3G into virions PubMed
vif Endogenous APOBEC3 proteins, particularly APOBEC3D, APOBEC3F, and APOBEC3G, can potently inhibit HIV-1 propagation in a mouse model by mutating 14DRMR17 and/or 40YRHHY44 motifs in Vif PubMed
vif Small molecules identified by a multi-round screening recover APOBEC3G expression in the presence of HIV-1 Vif and increase APOBEC3G incorporation into Vif-proficient virus particles PubMed
vif HIV-1 Vif(HXB2) interacts with and degrades the A3G D128K mutant in cells PubMed
vif HIV-1 Vif mutant E88A/W89A fails to bind to CBF-beta, which impairs Vif-mediated degradation of both A3F and A3G proteins and HIV-1 replication in non-permissive CEM cells PubMed
vif The T(Q/D/E)x(5)ADx(2)(I/L) motif, located at residues 96 to 107 in HIV-1 Vif, plays a critical role in neutralizing activity toward A3G. This motif regulates Vif interaction with Cul5 PubMed
vif Significant levels of ubiquitinated A3G and A3G20K/R are detected in the presence of HIV-1 Vif. Vif-induced ubiquitination of A3G and A3G20K/R is inhibited by Cul5deltaNedd8 PubMed
vif A single amino acid replacement of Asp-128 in human APOBEC3G with the Lys-128 of African green monkey (AGM) APOBEC3G causes the enzyme to switch its interaction, becoming sensitive to SIV(AGM) Vif and resistant to HIV-1 Vif PubMed
vif HIV-1 Vif suppresses the inhibitory effects of APOBEC3G on HIV-1 replication by reducing its intracellular expression and inhibiting its virion encapsidation PubMed
vif Both HIV-1 Vif-induced downregulation of APOBEC3G and efficient infectivity in the presence of APOBEC3G requires CUL4A neddylation PubMed
vif HIV-1 Vif mutants W5S, W21S, W38S, W89S, F112S, and F115S have a reduced ability to interact with CBF-beta and still interact with A3G, but fail for Vif-mediated degradation of A3G PubMed
vif Expression of CBF-beta from mouse, cattle, chicken, and zebrafish restores HIV-1 Vif-mediated A3G degradation ability in CBF-beta-silenced HEK293T cells PubMed
vif The HIV-1 Vif N-terminal motif (residues 18-38) binds CUL5 in mammalian cells and is reguired for A3F and A3G degradation and HIV-1 infectivity PubMed
vif HIV-1 Vif mutants C114S and C133A abolish the interaction with CUL5, which leads to fail to A3G degradation by Vif PubMed
vif CBF-beta isoform 1 and isoform 2 stabilize HIV-1 Vif to degrade A3G and increase viral infectivity PubMed
vif CBFbeta1-126 is fully functional in the HIV-1 Vif-mediated degradation of A3G, but a further deletion of the C-terminal six amino acid residues (CBFbeta1-120) almost completely abolish its ability to contribute to Vif-induced A3G degradation PubMed
vif APOBEC3G C97A mutant binds to HIV-1 Vif but is resistant to degradation by Vif. Vif inhibits encapsidation of APOBEC3G C97A and restores viral infectivity PubMed
vif The appropriate ratio of HIV-1 Vif to A3G protein levels is required for optimal virus replication under different physiological conditions PubMed
vif The active site proximal loop extension (residues 124-129) in UBE2F is critical for HIV-1 Vif-mediated A3G degradation PubMed
vif The conjugation of NEDD8 to Cullin-5 by UBE2F is required for HIV-1 Vif-mediated A3G degradation PubMed
vif Putative serine/threonine phosphorylation point mutations in HIV-1 Vif (T96A, S144A/E, S165A/E, or T188A/E) do not alter Vif-mediated A3G degradation activity, with the exception of Vif T96E PubMed
vif A patient-derived HIV-1 Vif I107T mutant impairs ability to mediate the degradation of A3G. HIV-1 carrying an I107T Vif mutation displays significantly reduced fitness in A3G(+) T cells and PBMCs PubMed
vif The interaction of A3G with HIV-1 Vif affects Vif oligomerization in living cells PubMed
vif SIVsmm Vif-mediated A3G degradation requires a region between A3G amino acid positions 122 and 148. Human A3G 129D and 129Q mutants reduce HIV-1, HIV-2, and SIVsmm Vif binding and are resistant to Vif-mediated degradation PubMed
vif The inhibition of A3G's processivity and specific activity by HIV-1 Vif are two different functions mediated by an A3G-Vif or ssDNA-Vif interaction, respectively PubMed
vif Prostaglandin A1-treated HIV-1-infected cells induce HSP70 synthesis, which leads to block HIV-1 Vif-mediated A3G degradation and to reduce Gag levels in non-permissive cells PubMed
vif HIV-1 Vif co-localizes with A3G peptide 211-225 in cells and the A3G peptide impairs Vif-induced degradation of endogenous A3G PubMed
vif A3G upregulates NKG2D ligands through an ATM pathway. HIV-1 Vif counteracts this upregulation by decreasing A3G expression PubMed
vif The antiviral activity of A3G to HIV-1 vif mutants NL4-3 40YRHHY44>A5 and NL4-3 14DRMR17>A4 with G-to-A hypermutations confers a greater restriction than the combined antiviral activity of A3F and A3DE in activated CD4+ T cells and macrophages PubMed
vif Unusual substitutions V13I, V55T, and L81M in HIV-1 Vif from children infected perinatally without progression to AIDS are located in three distinct Vif motifs important for the interaction with A3G/A3F PubMed
vif Mutations in HIV-1 Vif PPLP motif (amino acids 161-164) reduces Vif binding to A3G without affecting its interaction with ElonginC and Cullin5 PubMed
vif Arginine substitutions for Lys-297, 301, 303, and 334 cause A3G resistant to Vif-mediated degradation. The mutant displays normal Vif binding and inhibits HIV-1 infection PubMed
vif An extensive mutational analysis of HIV-1 Vif reveals that two distinct regions of Vif, amino acids Y(40)RHHY(44) and D(14)RMR(17), are essential for binding to A3G and A3F, respectively PubMed
vif HIV-1 Vif, which suppresses both APOBEC3G and APOBEC3F antiviral function by inducing their degradation, may selectively remove these proteins from, and/or restrict their localization to, P-bodies PubMed
vif The binding of HIV-1 Vif to APOBEC3G is specifically mediated by a strong interacting domain encompassing amino acids 85-99 in APOBEC3G and 169-192 in Vif PubMed
vif The C-terminal domain (amino acid residues 156-193) of APOBEC3G is required for binding with HIV-1 Vif PubMed
vif HIV-1 Vif alleles from seven HIV-1 subtypes show their abilities to degrade and counteract A3G efficiently PubMed
vif Virion-encapsidated HIV-1 Vif, purified Vif protein and the Vif-derived peptide Vif25-39 inhibit the deamination activity of A3G PubMed
vif The N-terminal HA tag stabilizes A3G20K/R degradation induced by HIV-1 Vif, at least in part, by blocking Vif-mediated A3G polyubiquitination PubMed
vif A mutagenesis screen of CBF-beta surface residues reveals that a single amino acid change, F68D, disrupts HIV-1 Vif binding and its ability to degrade APOBEC3G PubMed
vif Residues Y222, Q237, R238, R239, W269, and K270 in the C-terminal cytidine deaminase domain are involved in the interaction with HIV-1 Vif PubMed
vif A potent small molecular compound VEC-5 protects APOBEC3G, APOBEC3F, and APOBEC3C from HIV-1 Vif-induced degradation and enhances A3G incorporation into HIV-1 virions by inhibiting the interaction between Vif and elongin C PubMed
vif Highly conserved tryptophan residues in the N-terminal region of HIV-1 Vif are required for the suppression of both APOBEC3G and APOBEC3F PubMed
vif HIV-1 Vif induces the gradual transition of APO3G translated in vitro or expressed in HeLa cells from a low molecular mass (LMM) conformation to puromycin-sensitive high molecular mass (HMM) complexes PubMed
vif A VxIPLx(4-5)LxPhix(2)YWxL motif (amino acids 55-72) in HIV-1 Vif is required for efficient interaction between Vif and A3G, Vif-mediated A3G degradation and virion exclusion PubMed
vif APOBEC3G fused with a virion-targeting polypeptide (amino acids 14-88) derived from HIV-1 Vpr is incorporated into Vif(+) HIV-1 particles and inhibits infectivity and spread of the virions among CD4(+) T cells PubMed
vif APOBEC3G fused with ubiquitin-associated domain 2 (UBA2) in HHR23A protein is more resistant to Vif-mediated protein degradation than APOBEC3G PubMed
vif HIV-1 Vif reduces cellular expression and packaging of A3G-3A chimera PubMed
vif Suppression of viral infectivity by a peptide antagonist of Vif dimerization domain is dependent on the expression of Vif and hA3G PubMed
vif Expression of hA3G fragments 1-156 or 157-384 dominantly inhibits the Vif-mediated degradation of full-length hA3G; only the N-terminal fragment inhibits the Vif/hA3G interaction PubMed
vif In vitro biochemical and cell-based binding assays show residues 40 to 71 in the N terminus of Vif contain a nonlinear binding site for APOBEC3G. Mutation of the highly conserved residues His42/43 in this region inhibits Vif-APOBEC3G binding PubMed
vif Vif-deficient HIV-1 replicates as equally well as wild-type virus in CEM-T4 cells expressing high levels of A3G and A3F, indicating CEM-T4 cells lack a cellular co-factor for these endogenous antiretroviral proteins PubMed
vif A3G without ubiquitylation is still degraded by proteasomes in an HIV-1 Vif-dependent manner. Polyubiquitynated Vif is critical for A3G proteasomal degradation PubMed
vif NF-IL6 facilitates the reverse transcription of HIV-1 by binding to and inhibiting the antiviral cytidine deaminase APOBEC3G. A mutation in NF-IL6 at Ser-288 weakens its binding to APOBEC3G and strongly inhibits HIV-1 replication PubMed
vif Introduction of two Vif-binding mutants (D128K and P129A) into the R88-A3G fusion protein shows that both R88-A3GD128K and R88-A3GP129A possess very potent anti-HIV activity PubMed
vif HIV-1 Vif-22H mutant uses APOBEC3G hypermutation to develop resistance in certain non-B variants PubMed
vif N-terminal region (amino acids 21-43) of HIV-1 Vif is important for suppression of APOBEC3G PubMed
vif Protein kinase A (PKA) binds and phosphorylates A3G at Thr32 in vitro and in vivo. This phosphorylation event reduces the binding of A3G to Vif and its subsequent ubiquitination and degradation PubMed
vif MDM2 reduces cellular Vif levels and reversely increases A3G levels, because the interaction between MDM2 and Vif prevents A3G from binding to Vif PubMed
vif A novel conserved 69YXXL72 motif in HIV-1 Vif mediates binding to human A3G and its subsequent degradation. Tyr69 and Trp70 residues in the YXXL motif are required for binding to A3G in vitro PubMed
vif C-terminal half of HIV-1 Vif from subtype C virus possesses major determinant for A3G degradation PubMed
vif Newly synthesized APOBEC3G is more sensitive to HIV-1 Vif-induced degradation than preexisting APOBEC3G PubMed
vif Amino acids 121 to 149 of A3G are essential for binding to the 40YRHHY44 region of HIV-1 Vif but not sufficient for A3G degradation PubMed
vif APOBEC3G in exosomes reduces accumulation of HIV-1 reverse transcription products and steady-state levels of HIV-1 Gag and Vif proteins PubMed
vif The SLV portion of the Vif SLV/Ix4Yx9Y motif is required for Vif specificity for APOBEC3G degradation PubMed
vif Residues K22, K26, Y30, and Y40 in the SLV/Ix4Yx9Y motif of HIV-1 Vif are important for the Vif-induced degradation and suppression of cellular APOBEC3G. The positively charged K26 is the most critical residue for A3G inactivation PubMed
vif HIV-1 Vif K22E and RH41/42AA mutants are able to suppress the anti-viral activity of A3C, but are ineffective in suppressing the anti-viral activity of A3G. K22, R41, and H42 residues are important for Vif-mediated degradation of A3G, but not A3C PubMed
vif 5' splice site D2 and an exonic splicing enhancer exist in the HIV-1 genome is to regulate the levels of vif mRNA and Vif protein in infected cells to counteract cellular restriction factor APOBEC3G PubMed
vif Human T cell line CEM.NKR clones display inhibition of HIV-1 replication although these clones retain low levels of A3DE, A3F, A3G, and A3H expression, suggesting that a novel restriction factor distinct from APOBEC3s exists in CEM.NKR cells PubMed
vif Incorporation of HIV-1 Vif into virions is dependent on its interaction with A3G/A3F PubMed
vif Compounds IMB-26 and IMB-35 bind directly to the hA3G protein, suppress HIV-1 Vif/hA3G interaction, and therefore protect hA3G from Vif-mediated degradation PubMed
vif Alternative splice removal of exon 2 or exons 3-5 of A3G produces proteins that do not interact with HIV-1 Vif and lack antiviral activity PubMed
vif Residues G84, and, to a lesser extent, I87 and W89 within the (81)LGxGxxIxW(89) domain affect Vif binding to A3G and play very critical roles in A3G neutralizing activity PubMed
vif HIV-1 Vif inhibits the antiviral function of A3G in a subtype-dependent manner. The N-terminal region (amino acids 1-31) of subtype C-derived Vif protein is crucial for the anti-A3G activity PubMed
vif APOBEC3G can escape the inhibition from Vif and retain its antiviral activity when it is expressed high enough PubMed
vif Approximately 7 (+/-4) molecules of APOBEC3G are incorporated into HIV-1 Vif-negative virions produced from human PBMCs; HIV-1 Vif inhibits this incorporation PubMed
vif IFN-alpha enhances APOBEC3G expression and inhibits suppression of APOBEC3G by HIV-1 Vif PubMed
vif HSP70 interacts with both APOBEC3G and HIV-1 Vif, which stabilizes APOBEC3G and blocks Vif-mediated degradation of APOBEC3G PubMed
vif Human A3G is a host restriction factor against hepatitis C virus (HCV). Exogenous HIV-1 Vif decreases intracellular hA3G and therefore enhances HCV proliferation PubMed
vif Three A3G mutants, containing duplicate CD1 domain (residues 65-100), duplicate CD2 domain (residues 257-291), or position switched CD domains, has no significant effect in A3G/Vif interaction and in incorporation into virions PubMed
vif Mutation of amino acid S144 in HIV-1 HXB2 Vif significantly reduces the ability of Vif to inhibit the antiviral activity of APOBEC3G PubMed
vif Binding of APOBEC3G with HIV-1 Vif influences the localization of Vif, and mutation of the isoleucine at Vif amino acid 9 disrupts this interaction PubMed
vif The overall negative charge of the 3-amino-acid motif Asp128, Pro129, and Asp130 in APOBEC3G appears critical for recognition by Vif. The immediately adjacent 4 amino acids, residues 124 to 127, are important for the packaging of A3G into HIV-1 particles PubMed
vif Treatment with the membrane-permeable zinc chelator TPEN prevents Vif function, and causes the blockage of Cul5 recruitment and APOBEC3G (A3G) degradation PubMed
Vpr vpr Ubiquitination and degradation levels of APOBEC3G is upregulated in the presence of HIV-1 Vpr in the proviral backbone compared to the levels for control PubMed
vpr HIV-1 Vpr induces the degradation of APOBEC3G through VprBP binding and participation of the proteasome, leading to a reduction in APOBEC3G encapsidation into virions PubMed
vpr HIV-1 Vpr increases expression of HIV-1 Vif and APOBEC3G in cells PubMed
Vpu vpu The expression of APOBEC3G is enhanced in Vpu-deficient HIV-1-infected cells as compared to that in wild-type-infected cells PubMed
integrase gag-pol HIV-1 (p8.9) RT binds to APOBEC3G variants (wild type, W94A, W127A and W94A/W127A) PubMed
gag-pol The C-terminal domain (amino acids 212-288) of HIV-1 IN and the first linker region (amino acids 104-156) of APOBEC3G are required for IN and APOBEC3G interaction PubMed
gag-pol In HIV-1 virions, APOBEC3G interacts with HIV-1 IN and NC, which are known to be important for reverse transcription and integration PubMed
gag-pol Newly synthesized A3G is incorporated into virion cores and assembles into a large RNA containing intravirion complex composed of IN, NC, and genomic RNA. Enzymatic activity of A3G is negatively regulated by RNA binding in the complex PubMed
nucleocapsid gag The N-terminus (residues 1-11) of HIV-1 nucleocapsid is critical for HIV-1 Gag and APOBEC3G interaction and virion packaging; the linker region (residues 121-161) of APOBEC3G is also important for efficient packaging into HIV-1 Gag virus like particles PubMed
gag Transient exposure of Pr(-) viral RNA to NCp7 in vitro returns the quality and quantity of tRNA(3)(Lys) annealing to Pr(+) levels. The presence of A3G prevents this rescue and creates a further reduction in tRNA(3)(Lys) annealing PubMed
gag Interaction of APOBEC3G with HIV-1 nucleocapsid requires RNA, which may form a bridge between these two proteins PubMed
gag Newly synthesized A3G is incorporated into virion cores and assembles into a large RNA containing intravirion complex composed of IN, NC, and genomic RNA. Enzymatic activity of A3G is negatively regulated by RNA binding in the complex PubMed
gag Inhibition of tRNA3-Lys priming by A3G is associated with an inhibition of tRNA3-Lys annealing to viral RNA. The A3G-induced inhibition of tRNA-Lys priming occurs in a dose-dependent manner and can be rescued with increasing amounts of NC PubMed
gag Overexpression of SRP19 reduces the incorporation of 7SL RNA and A3G into virions in a dose-dependent manner PubMed
gag Efficient incorporation of 7SL RNA and A3G into virions is mediated by the RNA-binding nucleocapsid domain of HIV-1 Gag PubMed
gag In vitro biochemical assays show A3G significantly inhibits all HIV-1 RT-catalyzed DNA elongation reactions with or without HIV-1 NC. In the case of (-) strong-stop DNA synthesis, the inhibition is independent of A3G's catalytic activity PubMed
gag Formation of the NC and A3G complex in vitro is promoted by single-stranded RNAs (ssRNAs) containing G residues, human Y RNAs and 7SL RNA, but not promoted by highly structured tRNAs and rRNAs PubMed
gag Approximately 7 (+/-4) molecules of APOBEC3G are incorporated into HIV-1 Vif-negative virions produced from human PBMCs; this incorporation is mediated by HIV-1 nucleocapsid PubMed
gag The basic linker region (Gag405-411) of NC is essential for the membrane association of APOBEC3G in a Gag-APOBEC3G complex. APOBEC3G is packaged as a multimer that is bound to packaged RNA PubMed
gag Interaction of APOBEC3G with the carboxy-terminal nucleocapsid/p6 domain of the Gag polyprotein precursor is observed by Western analysis PubMed
p6 gag Interaction of APOBEC3G with the carboxy-terminal nucleocapsid/p6 domain of the Gag polyprotein precursor is observed by Western analysis PubMed
reverse transcriptase gag-pol HIV-1 (p8.9) RT binds to APOBEC3G variants (wild type, W94A, W127A and W94A/W127A) PubMed
gag-pol Both HIV-1 RTp66 and RTp51 proteins interact with APOBEC3G in the coimmunoprecipation assay and their interaction does not require the presence of viral RNA and HIV-1 IN PubMed
gag-pol APOBEC3G decreases the efficiency of reverse transcriptase-mediated DNA synthesis by binding to the RNA template, rather than by physically interacting with reverse transcriptase PubMed
gag-pol In vitro biochemical assays show A3G significantly inhibits all HIV-1 RT-catalyzed DNA elongation reactions with or without HIV-1 NC. In the case of (-) strong-stop DNA synthesis, the inhibition is independent of A3G's catalytic activity PubMed
gag-pol Vif-negative HIV-1 produced from 293T cells transiently expressing hA3G are impaired in early and late viral DNA production, and in viral infectivity, which are correlated with an inability of tRNA(3)(Lys) to prime reverse transcription PubMed
gag-pol The N-terminal fingers-palm domain (residues 1-243) of HIV-1 RT and the N-terminal first CDD and part of the linker domains (residues 65-132) of APOBEC3G are involved in the binding between RT and APOBEC3G PubMed
gag-pol APOBEC3-driven mutagenesis contributes to the generation of both M184I and E138K mutations in HIV-1 RT in the absence of drug exposure PubMed
gag-pol Enzymatic activity of A3G is negatively regulated by RNA binding in the intravirion complex. Inactive A3G is activated by viral RNase H during reverse transcription PubMed
gag-pol The frequencies of G-to-A mutations induced by A3G are increased after infection with an HIV-1 K65R/M184V RT virus variant. Overall, the G-to-A mutation frequencies are lower in PBMCs than in H9 T-cells PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ12740

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables cytidine deaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables cytidine deaminase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables cytidine deaminase activity TAS
Traceable Author Statement
more info
PubMed 
enables dCTP deaminase activity TAS
Traceable Author Statement
more info
 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables zinc ion binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA cytosine deamination IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in DNA cytosine deamination IDA
Inferred from Direct Assay
more info
PubMed 
involved_in base conversion or substitution editing TAS
Traceable Author Statement
more info
PubMed 
involved_in cytidine deamination IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cytidine to uridine editing IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in defense response to virus IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in defense response to virus IDA
Inferred from Direct Assay
more info
PubMed 
involved_in innate immune response IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of viral genome replication IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of viral process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of defense response to virus by host IDA
Inferred from Direct Assay
more info
PubMed 
involved_in transposable element silencing IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in P-body IDA
Inferred from Direct Assay
more info
PubMed 
part_of apolipoprotein B mRNA editing enzyme complex TAS
Traceable Author Statement
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ribonucleoprotein complex IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
DNA dC->dU-editing enzyme APOBEC-3G
Names
APOBEC-related cytidine deaminase
APOBEC-related protein 9
DNA dC->dU editing enzyme
apolipoprotein B editing enzyme catalytic polypeptide-like 3G
apolipoprotein B mRNA editing enzyme cytidine deaminase
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3G
apolipoprotein B mRNA-editing enzyme catalytic polypeptide 3G
deoxycytidine deaminase
phorbolin-like protein MDS019
NP_001336365.1
NP_001336366.1
NP_001336367.1
NP_068594.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001349436.1NP_001336365.1  DNA dC->dU-editing enzyme APOBEC-3G isoform 2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AL022318, AL078641
    UniProtKB/TrEMBL
    Q05JX5
    Conserved Domains (1) summary
    pfam08210
    Location:191365
    APOBEC_N; APOBEC-like N-terminal domain
  2. NM_001349437.2NP_001336366.1  DNA dC->dU-editing enzyme APOBEC-3G isoform 3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AL022318, AL078641
    UniProtKB/TrEMBL
    Q05JX5
    Conserved Domains (3) summary
    cd01283
    Location:166
    cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
    pfam05240
    Location:45126
    APOBEC_C; APOBEC-like C-terminal domain
    pfam08210
    Location:135309
    APOBEC_N; APOBEC-like N-terminal domain
  3. NM_001349438.3NP_001336367.1  DNA dC->dU-editing enzyme APOBEC-3G isoform 4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (4) is shorter at the C-terminus compared to isoform 1.
    Source sequence(s)
    AL022318
    Conserved Domains (1) summary
    pfam08210
    Location:17178
    APOBEC_N; APOBEC-like N-terminal domain
  4. NM_021822.4NP_068594.1  DNA dC->dU-editing enzyme APOBEC-3G isoform 1

    See identical proteins and their annotated locations for NP_068594.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AL022318, AL078641, BC009683
    Consensus CDS
    CCDS13984.1
    UniProtKB/Swiss-Prot
    B2RDR9, Q45F02, Q5TF77, Q7Z2N1, Q7Z2N4, Q9H9H8, Q9HC16
    UniProtKB/TrEMBL
    Q05JX5
    Related
    ENSP00000385057.3, ENST00000407997.4
    Conserved Domains (1) summary
    pfam08210
    Location:202376
    APOBEC_N; APOBEC-like N-terminal domain

RNA

  1. NR_146179.3 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) lacks an alternate exon and differs in the 3' end compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria
    Source sequence(s)
    AL022318

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    39077005..39087743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    39547423..39558159
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)