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AMD14_RS16670 TonB-dependent receptor [ Xanthomonas citri pv. citri ]

Gene ID: 66912273, updated on 1-Aug-2024

Summary

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Gene symbol
AMD14_RS16670
Gene description
TonB-dependent receptor
Locus tag
AMD14_RS16670
Gene type
protein coding
Organism
Xanthomonas citri pv. citri (strain: MN12, pathovar: citri, nat-host: citrus spp., sub-species: citri)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas
Old locus tag
J164_03367; J164_RS16715
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Genomic context

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NZ_CP008998.1Genomic Context describing neighboring genes Neighboring gene lysozyme inhibitor LprI family protein Neighboring gene hypothetical protein Neighboring gene FG-GAP repeat protein Neighboring gene DUF3574 domain-containing protein Neighboring gene glycoside hydrolase family 15 protein Neighboring gene trehalose-phosphatase Neighboring gene alpha,alpha-trehalose-phosphate synthase (UDP-forming)

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP008998.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative Genomics of Xanthomonas citri pv. citri A* Pathotype Reveals Three Distinct Clades with Varying Plasmid Distribution. Webster J, et al. Microorganisms, 2020 Dec 8. PMID 33302542, Free PMC Article
  2. TonB-dependent receptors-structural perspectives. Ferguson AD, et al. Biochim Biophys Acta, 2002 Oct 11. PMID 12409204

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
TonB-dependent receptor

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP008998.1 Reference assembly

    Range
    3753001..3755436
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011052107.1 MULTISPECIES: TonB-dependent receptor [Xanthomonas]

    See identical proteins and their annotated locations for WP_011052107.1

    UniProtKB/TrEMBL
    A0A0U5FK85, A0A7S6YV96, A0A9X6BDW1, A0AAI7ZH98, M4TX42
    Conserved Domains (1) summary
    cd01347
    Location:54 → 811
    ligand_gated_channel; TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. ...
Nucleotide Protein
Heading Accession and Version