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si:dkey-20i10.7 si:dkey-20i10.7 [ Danio rerio (zebrafish) ]

Gene ID: 799792, updated on 28-Oct-2024

Summary

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Official Symbol
si:dkey-20i10.7provided by ZNC
Official Full Name
si:dkey-20i10.7provided by ZNC
Primary source
ZFIN:ZDB-GENE-090313-232
See related
AllianceGenome:ZFIN:ZDB-GENE-090313-232
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See si:dkey-20i10.7 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (12488183..12494575, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (12355708..12362100, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene dual adaptor of phosphotyrosine and 3-phosphoinositides Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 Neighboring gene uncharacterized LOC137487333 Neighboring gene retinal pigment epithelium-derived rhodopsin homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein LOC799792

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327796.1 → NP_001314725.1  uncharacterized protein LOC799792

    Status: VALIDATED

    Source sequence(s)
    CT025771
    UniProtKB/TrEMBL
    A0A8M1P3R4
    Conserved Domains (3) summary
    pfam05485
    Location:4 → 76
    THAP; THAP domain
    pfam13359
    Location:373 → 538
    DDE_Tnp_4; DDE superfamily endonuclease
    pfam13613
    Location:291 → 343
    HTH_Tnp_4; Helix-turn-helix of DDE superfamily endonuclease

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    12488183..12494575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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