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flocculation FLO11-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818595, updated on 18-Sep-2024

Summary

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Official Full Name
flocculation FLO11-like protein
Primary source
TAIR:AT2G40070
Locus tag
AT2G40070
See related
Araport:AT2G40070
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Basic Proline-rich Protein 1; BPP1; T28M21.23; T28M21_23
Summary
Encodes a microtubule-associated protein.
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (16728193..16731736, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nuclear RNA polymerase D1B Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene Clathrin light chain protein Neighboring gene ncRNA Neighboring gene EARLY FLOWERING-like protein (DUF1313)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Basic Proline-Rich Protein-Mediated Microtubules Are Essential for Lobe Growth and Flattened Cell Geometry. Wong JH, et al. Plant Physiol, 2019 Dec. PMID 31601644, Free PMC Article
  2. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. Hamada T, et al. Plant Physiol, 2013 Dec. PMID 24134884, Free PMC Article
  3. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084559.1
NM_001336819.1
NM_129565.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within anisotropic cell growth IGI
Inferred from Genetic Interaction
more info
 PubMed 
acts_upstream_of_or_within cortical microtubule organization IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in cortical microtubule IDA
Inferred from Direct Assay
more info
 PubMed 
part_of microtubule associated complex IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
flocculation FLO11-like protein
NP_001078028.1
  • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 108635 Blast hits to 60786 proteins in 2176 species: Archae - 287; Bacteria - 15142; Metazoa - 39415; Fungi - 26849; Plants - 4416; Viruses - 2864; Other Eukaryotes - 19662 (source: NCBI BLink).
NP_181536.3
  • BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16728193..16731736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129565.5 → NP_181536.3  flocculation FLO11-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181536.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZ51, C0Z3I5, Q494P4
    Conserved Domains (2) summary
    PHA03247
    Location:179 → 436
    PHA03247; large tegument protein UL36; Provisional
    cl01482
    Location:13 → 59
    CpxP_like; CpxP component of the bacterial Cpx-two-component system and related proteins

  2. NM_001336819.1 → NP_001323814.1  flocculation FLO11-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AY74, C0Z3I5

  3. NM_001084559.1 → NP_001078028.1  flocculation FLO11-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078028.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8MRI7, C0Z3I5
    Conserved Domains (1) summary
    PHA03247
    Location:139 → 396
    PHA03247; large tegument protein UL36; Provisional
Nucleotide Protein
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