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WEB family protein (DUF827) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820509, updated on 18-Sep-2024

Summary

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Official Full Name
WEB family protein (DUF827)
Primary source
TAIR:AT3G13190
Locus tag
AT3G13190
See related
Araport:AT3G13190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
4
Sequence:
Chromosome: 3; NC_003074.8 (4240139..4242008)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein Neighboring gene Cwf15 / Cwc15 cell cycle control family protein Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001084674.1
NM_001338036.1
NM_112159.3
NM_202572.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
WEB family protein (DUF827)
NP_001319537.1
  • Plant protein of unknown function (DUF827); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G55860.1); Has 29991 Blast hits to 19596 proteins in 1702 species: Archae - 469; Bacteria - 4655; Metazoa - 14295; Fungi - 2209; Plants - 1912; Viruses - 102; Other Eukaryotes - 6349 (source: NCBI BLink).
NP_187925.1
  • Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G55860.1); Has 29991 Blast hits to 19596 proteins in 1702 species: Archae - 469; Bacteria - 4655; Metazoa - 14295; Fungi - 2209; Plants - 1912; Viruses - 102; Other Eukaryotes - 6349 (source: NCBI BLink).
NP_974301.1
  • Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G55860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    4240139..4242008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338036.1 → NP_001319537.1  WEB family protein (DUF827) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LK53
    UniProtKB/TrEMBL
    A0A178VAA6, A0A5S9XBN4
    Conserved Domains (1) summary
    COG1196
    Location:42 → 305
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. NM_202572.2 → NP_974301.1  WEB family protein (DUF827) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974301.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LK53
    UniProtKB/TrEMBL
    A0A178VAA6, A0A5S9XBN4
    Conserved Domains (1) summary
    COG1196
    Location:42 → 305
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. NM_112159.3 → NP_187925.1  WEB family protein (DUF827) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187925.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LK53
    UniProtKB/TrEMBL
    A0A178VAA6, A0A5S9XBN4
    Conserved Domains (1) summary
    COG1196
    Location:42 → 305
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  4. NM_001084674.1 → NP_001078143.1  WEB family protein (DUF827) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078143.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LK53
    UniProtKB/TrEMBL
    A0A178VAA6, A0A5S9XBN4
    Conserved Domains (1) summary
    COG1196
    Location:42 → 305
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LK53.1

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