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Regulator of chromosome condensation (RCC1) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 820782, updated on 18-Sep-2024

Summary

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Official Full Name
Regulator of chromosome condensation (RCC1) family protein
Primary source
TAIR:AT3G15430
Locus tag
AT3G15430
See related
Araport:AT3G15430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (5208559..5211779)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene Transcription factor TFIIIC, tau55-related protein Neighboring gene RING/U-box protein Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene Ribosomal RNA processing Brix domain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Miscellaneous features

  • Loc: 5209169-5209315 AT3G15430.uORF1
NM_001338171.1
NM_001338172.1
NM_001338173.1
NM_112411.3
NM_202594.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
Regulator of chromosome condensation (RCC1) family protein
NP_566512.1
  • Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G26100.2); Has 18094 Blast hits to 5607 proteins in 419 species: Archae - 68; Bacteria - 2169; Metazoa - 6534; Fungi - 1176; Plants - 2879; Viruses - 4; Other Eukaryotes - 5264 (source: NCBI BLink).
NP_974323.1
  • Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G26100.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    5208559..5211779
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001338170.1 → NP_001325716.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
    Conserved Domains (2) summary
    COG5184
    Location:129 → 465
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00646
    Location:9 → 58
    F-box; F-box domain

  2. NM_202594.3 → NP_974323.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974323.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
    Conserved Domains (2) summary
    COG5184
    Location:129 → 465
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00646
    Location:9 → 58
    F-box; F-box domain

  3. NM_001338171.1 → NP_001325718.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
    Conserved Domains (2) summary
    COG5184
    Location:129 → 465
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00646
    Location:9 → 58
    F-box; F-box domain

  4. NM_001338172.1 → NP_001325717.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
    Conserved Domains (2) summary
    COG5184
    Location:129 → 465
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00646
    Location:9 → 58
    F-box; F-box domain

  5. NM_112411.3 → NP_566512.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566512.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
    Conserved Domains (2) summary
    COG5184
    Location:129 → 465
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00646
    Location:9 → 58
    F-box; F-box domain

  6. NM_001338173.1 → NP_001325719.1  Regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VCE7, A0A384KX18, Q94CF6, Q9LDU3
    Conserved Domains (2) summary
    COG5184
    Location:129 → 465
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
    pfam00646
    Location:9 → 58
    F-box; F-box domain
Nucleotide Protein
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