U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOW protein: PPR containing-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821417, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
LOW protein: PPR containing-like protein
Primary source
TAIR:AT3G18840
Locus tag
AT3G18840
See related
Araport:AT3G18840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (6496135..6498388)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene polyol/monosaccharide transporter 5 Neighboring gene miscRNA Neighboring gene lysophosphatidyl acyltransferase 5

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA modification IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
LOW protein: PPR containing-like protein
NP_001078182.2
  • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 42936 Blast hits to 13106 proteins in 190 species: Archae - 0; Bacteria - 3; Metazoa - 51; Fungi - 30; Plants - 42456; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    6496135..6498388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084713.3 → NP_001078182.2  LOW protein: PPR containing-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078182.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LHN5
    UniProtKB/TrEMBL
    A0A178VAZ2, A0A654F8J4
    Conserved Domains (2) summary
    PLN03077
    Location:25 → 664
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:25 → 52
    PPR; PPR repeat [structural motif]

  2. NM_001338360.1 → NP_001325455.1  LOW protein: PPR containing-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LHN5
    UniProtKB/TrEMBL
    A0A178VAZ2, A0A654F8J4
    Conserved Domains (2) summary
    PLN03077
    Location:25 → 664
    PLN03077; Protein ECB2; Provisional
    sd00004
    Location:25 → 52
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LHN5.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools