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PAP85 cupin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 821835, updated on 18-Sep-2024

Summary

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Official Symbol
PAP85
Official Full Name
cupin family protein
Primary source
TAIR:AT3G22640
Locus tag
AT3G22640
See related
Araport:AT3G22640
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See PAP85 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Sequence:
Chromosome: 3; NC_003074.8 (8011724..8013941, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene ncRNA Neighboring gene 20S proteasome beta subunit D1 Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene rRNA processing protein-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A vicilin-like seed storage protein, PAP85, is involved in tobacco mosaic virus replication. Chen CE, et al. J Virol, 2013 Jun. PMID 23576511, Free PMC Article
  2. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
  3. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. PAP85 (annotated as a vicilin-like seed storage protein), was upregulated during 0.5 to 6 h of Tobacco mosaic virus infection.
    Title: A vicilin-like seed storage protein, PAP85, is involved in tobacco mosaic virus replication.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_113163.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in response to virus IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in response to virus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
cupin family protein
NP_566714.1
  • PAP85; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, seed; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G36700.1); Has 886 Blast hits to 876 proteins in 129 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 826; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    8011724..8013941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113163.4 → NP_566714.1  cupin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566714.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q42160, Q42174, Q42222, Q42326, Q56WF0, Q9LUJ7
    UniProtKB/TrEMBL
    A0A178V8B4, A0A5S9XEM8
    Conserved Domains (2) summary
    cd02244
    Location:74 → 253
    cupin_7S_vicilin-like_N; 7S vicilin seed storage globulin, N-terminal cupin domain
    cd02245
    Location:285 → 457
    cupin_7S_vicilin-like_C; 7S vicilin seed storage globulin, C-terminal cupin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LUJ7.1

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