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F-box associated ubiquitination effector family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 822100, updated on 18-Sep-2024

Summary

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Official Full Name
F-box associated ubiquitination effector family protein
Primary source
TAIR:AT3G25090
Locus tag
AT3G25090
See related
Araport:AT3G25090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (9140039..9141094, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene RPM1 interacting protein 4 Neighboring gene uncharacterized protein Neighboring gene cell division cycle 45 Neighboring gene fatA acyl-ACP thioesterase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box associated ubiquitination effector family protein
NP_001189968.1
  • F-box associated ubiquitination effector family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G23685.1).
NP_189145.1
  • F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box associated ubiquitination effector family protein (TAIR:AT3G23685.1); Has 853 Blast hits to 814 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 853; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    9140039..9141094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_113413.1 → NP_189145.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_189145.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J8W8, Q9LSG7
    Conserved Domains (3) summary
    pfam07734
    Location:162 → 302
    FBA_1; F-box associated
    TIGR01640
    Location:56 → 257
    F_box_assoc_1; F-box protein interaction domain
    cl23718
    Location:94 → 145
    ALP_like; alkaline phosphatases and sulfatases

  2. NM_001203039.1 → NP_001189968.1  F-box associated ubiquitination effector family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189968.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q1PEL9
    Conserved Domains (2) summary
    pfam07734
    Location:162 → 219
    FBA_1; F-box associated
    TIGR01640
    Location:56 → 217
    F_box_assoc_1; F-box protein interaction domain
Nucleotide Protein
Heading Accession and Version

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