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PAP/OAS1 substrate-binding domain superfamily [ Arabidopsis thaliana (thale cress) ]

Gene ID: 824325, updated on 18-Sep-2024

Summary

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Official Full Name
PAP/OAS1 substrate-binding domain superfamily
Primary source
TAIR:AT3G51620
Locus tag
AT3G51620
See related
Araport:AT3G51620
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T18N14.7
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Genomic context

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Location:
chromosome: 3
Exon count:
9
Sequence:
Chromosome: 3; NC_003074.8 (19143334..19148244)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene lipid transfer protein 5 Neighboring gene ATP-dependent helicase/deoxyribonuclease subunit B Neighboring gene with no lysine (K) kinase 5 Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
  2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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NM_115021.2
NM_180347.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PAP/OAS1 substrate-binding domain superfamily
NP_190730.2
  • PAP/OAS1 substrate-binding domain superfamily; BEST Arabidopsis thaliana protein match is: nucleotidyltransferases (TAIR:AT3G61690.1); Has 270 Blast hits to 218 proteins in 57 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 29; Plants - 185; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
NP_850678.2
  • PAP/OAS1 substrate-binding domain superfamily; BEST Arabidopsis thaliana protein match is: nucleotidyltransferases (TAIR:AT3G61690.1); Has 386 Blast hits to 356 proteins in 104 species: Archae - 0; Bacteria - 4; Metazoa - 102; Fungi - 40; Plants - 181; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    19143334..19148244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001339524.1 → NP_001326436.1  PAP/OAS1 substrate-binding domain superfamily [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VFU7, A0A1I9LP98

  2. NM_180347.4 → NP_850678.2  PAP/OAS1 substrate-binding domain superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850678.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9XKN0, F4J4G2
    Conserved Domains (1) summary
    cd05402
    Location:57 → 163
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases

  3. NM_115021.2 → NP_190730.2  PAP/OAS1 substrate-binding domain superfamily [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_190730.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4J4G3, Q9SCY9
    Conserved Domains (1) summary
    cd05402
    Location:57 → 163
    NT_PAP_TUTase; Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases
Nucleotide Protein
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