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TPR1 Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829171, updated on 18-Sep-2024

Summary

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Official Symbol
TPR1
Official Full Name
Tetratricopeptide repeat (TPR)-like superfamily protein
Primary source
TAIR:AT4G30480
Locus tag
AT4G30480
See related
Araport:AT4G30480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtTPR1; F17I23.180; F17I23_180; tetratricopeptide repeat 1
Summary
Encodes one of the 36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR) proteins (Prasad 2010, Pubmed ID: 20856808). Interacts with Hsp90/Hsp70 as co-chaperone.
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Genomic context

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See TPR1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Sequence:
Chromosome: 4; NC_003075.7 (14897346..14899121)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene glycine-rich protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene AFG1-like ATPase family protein Neighboring gene transmembrane protein (DUF788) Neighboring gene autophagy 18 B-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In silico identification of carboxylate clamp type tetratricopeptide repeat proteins in Arabidopsis and rice as putative co-chaperones of Hsp90/Hsp70. Prasad BD, et al. PLoS One, 2010 Sep 15. PMID 20856808, Free PMC Article
  2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001036679.1
NM_119194.5
NM_179226.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables Hsp90 protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tetratricopeptide repeat (TPR)-like superfamily protein
NP_001031756.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_194777.3
  • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 4 (TAIR:AT3G58620.1); Has 13751 Blast hits to 10343 proteins in 715 species: Archae - 525; Bacteria - 2944; Metazoa - 4001; Fungi - 1378; Plants - 1744; Viruses - 24; Other Eukaryotes - 3135 (source: NCBI BLink).
NP_849557.1
  • Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 4 (TAIR:AT3G58620.1); Has 7022 Blast hits to 5881 proteins in 426 species: Archae - 96; Bacteria - 637; Metazoa - 2797; Fungi - 861; Plants - 1268; Viruses - 25; Other Eukaryotes - 1338 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    14897346..14899121
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036679.1 → NP_001031756.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031756.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4JQB2

  2. NM_179226.3 → NP_849557.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849557.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q94F21
    Conserved Domains (3) summary
    smart00028
    Location:148 → 179
    TPR; Tetratricopeptide repeats
    sd00006
    Location:105 → 133
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:104 → 177
    TPR_11; TPR repeat

  3. NM_119194.5 → NP_194777.3  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_194777.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V2X1, Q8LF50, Q9M0B2
    Conserved Domains (2) summary
    TIGR00990
    Location:25 → 244
    3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
    sd00006
    Location:105 → 133
    TPR; TPR repeat [structural motif]
Nucleotide Protein
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