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ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 829862, updated on 18-Sep-2024

Summary

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Official Full Name
ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547)
Primary source
TAIR:AT4G37080
Locus tag
AT4G37080
See related
Araport:AT4G37080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AP22.58; AP22_58
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Genomic context

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Location:
chromosome: 4
Exon count:
10
Sequence:
Chromosome: 4; NC_003075.7 (17472980..17476979)

Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene PATATIN-like protein 5 Neighboring gene Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein Neighboring gene UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

GeneRIFs: Gene References Into Functions

General gene information

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NM_001204014.2
NM_119871.3
NM_202969.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547)
NP_001190943.1
  • Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2).
NP_195425.2
  • Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2); Has 1854 Blast hits to 1696 proteins in 329 species: Archae - 6; Bacteria - 397; Metazoa - 313; Fungi - 62; Plants - 588; Viruses - 2; Other Eukaryotes - 486 (source: NCBI BLink).
NP_974698.1
  • Protein of unknown function, DUF547; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003075.7 Reference assembly

    Range
    17472980..17476979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342429.1 → NP_001328848.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B5X2, A0A5S9Y008, A0A654FW82

  2. NM_001204014.2 → NP_001190943.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190943.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y008, A0A654FW82, A0A7G2F3I0, F4JR96
    Conserved Domains (2) summary
    pfam04784
    Location:406 → 531
    DUF547; Protein of unknown function, DUF547
    pfam14389
    Location:51 → 115
    Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

  3. NM_202969.1 → NP_974698.1  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974698.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9Y008, A0A654FW82, A0A7G2F3I0, F4JR96
    Conserved Domains (2) summary
    pfam04784
    Location:406 → 531
    DUF547; Protein of unknown function, DUF547
    pfam14389
    Location:51 → 115
    Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1

  4. NM_119871.3 → NP_195425.2  ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_195425.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V4V6, O23178, Q8RY64
    Conserved Domains (2) summary
    pfam04784
    Location:388 → 518
    DUF547; Protein of unknown function, DUF547
    pfam14389
    Location:39 → 102
    Lzipper-MIP1; Leucine-zipper of ternary complex factor MIP1
Nucleotide Protein
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