U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 834693, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein
Primary source
TAIR:AT5G46500
Locus tag
AT5G46500
See related
Araport:AT5G46500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K11I1.9; K11I1_9
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (18855955..18858552)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family Neighboring gene ncRNA Neighboring gene Disease resistance protein (TIR-NBS-LRR class) family

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Identification and molecular properties of SUMO-binding proteins in Arabidopsis. Park HC, et al. Mol Cells, 2011 Aug. PMID 21607647, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help
NM_001344687.1
NM_001344689.1
NM_001344690.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein
NP_001318749.1
  • BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    18855955..18858552
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001344688.1 → NP_001330778.1  protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBU6

  2. NM_001344687.1 → NP_001318749.1  protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9FHF5
    Conserved Domains (1) summary
    PLN03210
    Location:11 → 293
    PLN03210; Resistant to P. syringae 6; Provisional

  3. NM_001344689.1 → NP_001330777.1  protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9FHF5
    Conserved Domains (1) summary
    PLN03210
    Location:11 → 293
    PLN03210; Resistant to P. syringae 6; Provisional

  4. NM_001344690.1 → NP_001330779.1  protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBU6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.