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Transducin/WD40 repeat-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 835432, updated on 18-Sep-2024

Summary

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Official Full Name
Transducin/WD40 repeat-like superfamily protein
Primary source
TAIR:AT5G53500
Locus tag
AT5G53500
See related
Araport:AT5G53500
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MNC6.4; MNC6_4
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (21725441..21729413, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tRNA-Gly Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene oligopeptide transporter 9 Neighboring gene oligopeptide transporter 8 Neighboring gene vacuolar protein sorting 26A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_124730.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Transducin/WD40 repeat-like superfamily protein
NP_200162.1
  • Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G24320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    21725441..21729413 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345060.1 → NP_001330833.1  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIN9, A0A384KC58, A0A7G2FFS2, Q9FJD3
    Conserved Domains (2) summary
    cd00200
    Location:217 → 531
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224 → 268
    7WD40; WD40 repeat [structural motif]

  2. NM_124730.5 → NP_200162.1  Transducin/WD40 repeat-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200162.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UIN9, A0A384KC58, A0A7G2FFS2, Q9FJD3
    Conserved Domains (2) summary
    cd00200
    Location:217 → 531
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224 → 268
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
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