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ydeS putative fimbrial protein YdeS [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 946047, updated on 3-Dec-2024

Summary

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Official Symbol
ydeS
Official Full Name
putative fimbrial protein YdeS
Primary source
ECOCYC:G6794
Locus tag
b1504
See related
ASAP:ABE-0005013
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK1497
Summary
One of 25 FimA homologs in EcoGene. [More information is available at EcoGene: EG13801].
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Genomic context

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Sequence:
NC_000913.3 (1588309..1588839, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial adhesin protein YdeQ Neighboring gene putative fimbrial protein YdeR Neighboring gene fimbrial usher domain-containing protein YdeT Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
  2. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
  3. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
  
involved_in cell adhesion involved in single-species biofilm formation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in pilus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in pilus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
putative fimbrial protein YdeS

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    1588309..1588839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_416021.1 putative fimbrial protein YdeS [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_416021.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6D0ID12
    Conserved Domains (1) summary
    COG3539
    Location:1 → 176
    FimA; Pilin (type 1 fimbria component protein) [Cell motility]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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