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nfeR DNA-binding transcriptional repressor NfeR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947584, updated on 17-Dec-2024

Summary

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Official Symbol
nfeR
Official Full Name
DNA-binding transcriptional repressor NfeR
Primary source
ECOCYC:G7594
Locus tag
b3071
See related
ASAP:ABE-0010084
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3061; yqjI
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Genomic context

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Sequence:
NC_000913.3 (3216779..3217402)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Ile Neighboring gene NADPH-dependent ferric-chelate reductase Neighboring gene aerotaxis receptor Neighboring gene putrescine aminotransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Fur and the novel regulator YqjI control transcription of the ferric reductase gene yqjH in Escherichia coli. Wang S, et al. J Bacteriol, 2011 Jan. PMID 21097627, Free PMC Article
  2. Thermofluor-based high-throughput stability optimization of proteins for structural studies. Ericsson UB, et al. Anal Biochem, 2006 Oct 15. PMID 16962548
  3. Identification of co-regulated genes through Bayesian clustering of predicted regulatory binding sites. Qin ZS, et al. Nat Biotechnol, 2003 Apr. PMID 12627170
  4. Factors influencing the identification of transcription factor binding sites by cross-species comparison. McCue LA, et al. Genome Res, 2002 Oct. PMID 12368244, Free PMC Article
  5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
DNA-binding transcriptional repressor NfeR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3216779..3217402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417542.1 DNA-binding transcriptional repressor NfeR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417542.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376FWC2, A0A418GCJ3
    Conserved Domains (1) summary
    COG1695
    Location:60 → 184
    PadR; DNA-binding transcriptional regulator, PadR family [Transcription]
Nucleotide Protein
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