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yhdY putative ABC transporter membrane subunit YhdY [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947764, updated on 17-Dec-2024

Summary

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Official Symbol
yhdY
Official Full Name
putative ABC transporter membrane subunit YhdY
Primary source
ECOCYC:EG12836
Locus tag
b3270
See related
ASAP:ABE-0010736
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3257
Summary
Putative ABC transporter YhdWXYZ has an unknown substrate and yhdW' is an apparent pseudogene. [More information is available at EcoGene: EG12836]. YhdY is a membrane component of a predicted amino acid ABC transporter. [More information is available at EcoCyc: EG12836].
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Genomic context

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Sequence:
NC_000913.3 (3421325..3422428)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene putative ABC transporter membrane subunit YhdX Neighboring gene putative ABC transporter ATP-binding subunit YhdZ Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATP-binding cassette transporters in Escherichia coli. Moussatova A, et al. Biochim Biophys Acta, 2008 Sep. PMID 18634750
  2. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
  3. Getting in or out: early segregation between importers and exporters in the evolution of ATP-binding cassette (ABC) transporters. Saurin W, et al. J Mol Evol, 1999 Jan. PMID 9873074
  4. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
  5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in amino acid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in amino acid transport IEA
Inferred from Electronic Annotation
more info
  
involved_in peptide transport NAS
Non-traceable Author Statement
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of ATP-binding cassette (ABC) transporter complex IEA
Inferred from Electronic Annotation
more info
  
part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
Non-traceable Author Statement
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane NAS
Non-traceable Author Statement
more info
 PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
putative ABC transporter membrane subunit YhdY

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3421325..3422428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417736.2 putative ABC transporter membrane subunit YhdY [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417736.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0H3JKP0, D3GYR1
    Conserved Domains (1) summary
    COG0765
    Location:138 → 364
    HisM; ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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