U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

gspD Type II secretion system protein GspD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 947822, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
gspD
Official Full Name
Type II secretion system protein GspD
Primary source
ECOCYC:G7703
Locus tag
b3325
See related
ASAP:ABE-0010879
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3312; yheF
Summary
A divergon is a regulon comprised of two adjacent divergent operons or genes. [More information is available at EcoGene: EG12890]. In Escherichia coli, gspD is a member of an operon of genes (gspC-O) which are not normally expressed but are homologous to those encoding the secreton, or type II secretion machinery in Klebsiella oxytoca and Aeromonase hydrophila, among others . [More information is available at EcoCyc: G7703].
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_000913.3 (3456377..3458329)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative general secretion pathway protein B Neighboring gene Type II secretion system protein GspA Neighboring gene Type II secretion system protein GspC Neighboring gene Type II secretion system protein GspE Neighboring gene Type II secretion system protein GspF Neighboring gene Type II secretion system protein GspG

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Structural insights into the secretin translocation channel in the type II secretion system. Yan Z, et al. Nat Struct Mol Biol, 2017 Feb. PMID 28067918
  2. pIV, a filamentous phage protein that mediates phage export across the bacterial cell envelope, forms a multimer. Kazmierczak BI, et al. J Mol Biol, 1994 Apr 29. PMID 8158648
  3. A superfamily of proteins involved in different secretion pathways in gram-negative bacteria: modular structure and specificity of the N-terminal domain. Genin S, et al. Mol Gen Genet, 1994 Apr. PMID 8190064
  4. Insertion of an outer membrane protein in Escherichia coli requires a chaperone-like protein. Hardie KR, et al. EMBO J, 1996 Mar 1. PMID 8605893, Free PMC Article
  5. Biology of type II secretion. Sandkvist M. Mol Microbiol, 2001 Apr. PMID 11309111

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein secretion by the type II secretion system IEA
Inferred from Electronic Annotation
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cell outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in outer membrane IEA
Inferred from Electronic Annotation
more info
  
part_of type II protein secretion system complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of type II protein secretion system complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Type II secretion system protein GspD

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3456377..3458329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417784.4 Type II secretion system protein GspD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417784.4

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N8QWT0, A0A8T5YE14
    Conserved Domains (1) summary
    TIGR02517
    Location:30 → 604
    type_II_gspD; type II secretion system protein D
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.