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yjtD putative tRNA/rRNA methyltransferase YjtD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948924, updated on 17-Dec-2024

Summary

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Official Symbol
yjtD
Official Full Name
putative tRNA/rRNA methyltransferase YjtD
Primary source
ECOCYC:EG12309
Locus tag
b4403
See related
ASAP:ABE-0014442
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK4395; lasT
Summary
YjtD belongs to the SPOUT superfamily of methyltransferases . [More information is available at EcoCyc: EG12309].
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Genomic context

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Sequence:
NC_000913.3 (4640942..4641628)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YjjY Neighboring gene protein YtjE

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Anaerobic activation of arcA transcription in Escherichia coli: roles of Fnr and ArcA. Compan I, et al. Mol Microbiol, 1994 Mar. PMID 8022271
  2. Multiple stressor-induced proteome responses of Escherichia coli BL21(DE3). Han KY, et al. J Proteome Res, 2008 May. PMID 18363324
  3. The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase. Purta E, et al. BMC Mol Biol, 2006 Jul 18. PMID 16848900, Free PMC Article
  4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
  5. SPOUT: a class of methyltransferases that includes spoU and trmD RNA methylase superfamilies, and novel superfamilies of predicted prokaryotic RNA methylases. Anantharaman V, et al. J Mol Microbiol Biotechnol, 2002 Jan. PMID 11763972

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
putative tRNA/rRNA methyltransferase YjtD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    4640942..4641628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_418820.1 putative tRNA/rRNA methyltransferase YjtD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_418820.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A6N3DTA9
    Conserved Domains (1) summary
    PRK10433
    Location:1 → 228
    PRK10433; putative RNA methyltransferase; Provisional
Nucleotide Protein
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