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    alt aluminum tubes [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42127, updated on 9-Dec-2024

    Summary

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    Official Symbol
    altprovided by FlyBase
    Official Full Name
    aluminum tubesprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038535
    Locus tag
    Dmel_CG18212
    See related
    AllianceGenome:FB:FBgn0038535
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG18212; Dmel\CG18212; Q9VEH0_DROME
    Summary
    Located in endomembrane system. Is expressed in adult head; adult heart; and organism. Orthologous to human RRBP1 (ribosome binding protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See alt in Genome Data Viewer
    Location:
    90C1-90C1; 3-61 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (17673732..17682515, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (13499454..13508237, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene transfer RNA:Alanine-AGC 2-10 Neighboring gene uncharacterized protein Neighboring gene Monopolar spindle 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Off-target piRNA gene silencing in Drosophila melanogaster rescued by a transposable element insertion. Miller DE, et al. PLoS Genet, 2023 Feb. PMID 36809339, Free PMC Article
    2. The multiple roles of mps1 in Drosophila female meiosis. Gilliland WD, et al. PLoS Genet, 2007 Jul. PMID 17630834, Free PMC Article
    3. A germline clone screen for meiotic mutants in Drosophila melanogaster. Page SL, et al. Fly (Austin), 2007 May-Jun. PMID 18820465
    4. The meiotic defects of mutants in the Drosophila mps1 gene reveal a critical role of Mps1 in the segregation of achiasmate homologs. Gilliland WD, et al. Curr Biol, 2005 Apr 12. PMID 15823541
    5. Sometimes the result is not the answer: the truths and the lies that come from using the complementation test. Hawley RS, et al. Genetics, 2006 Sep. PMID 16988106, Free PMC Article

    See all (53) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Component Evidence Code Pubs
    located_in endomembrane system HDA PubMed 
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    aluminum tubes
    Names
    CG18212-PA
    CG18212-PB
    CG18212-PD
    CG18212-PE
    CG18212-PF
    CG18212-PG
    CG18212-PH
    CG18212-PI
    alt-PA
    alt-PB
    alt-PD
    alt-PE
    alt-PF
    alt-PG
    alt-PH
    alt-PI

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      17673732..17682515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275750.1 → NP_001262679.1  aluminum tubes, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262679.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960Y8
      Conserved Domains (1) summary
      TIGR02168
      Location:398 → 694
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001275749.1 → NP_001262678.1  aluminum tubes, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262678.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VEH0
      Conserved Domains (1) summary
      pfam00038
      Location:384 → 656
      Filament; Intermediate filament protein

    3. NM_206505.2 → NP_996227.1  aluminum tubes, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_996227.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VEH0
      Conserved Domains (1) summary
      pfam00038
      Location:384 → 656
      Filament; Intermediate filament protein

    4. NM_169771.2 → NP_732259.1  aluminum tubes, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732259.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VEH0
      Related
      FBpp0088431
      Conserved Domains (1) summary
      pfam00038
      Location:384 → 656
      Filament; Intermediate filament protein

    5. NM_169770.3 → NP_732258.1  aluminum tubes, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732258.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VEH0
      Related
      FBpp0088432
      Conserved Domains (1) summary
      pfam00038
      Location:384 → 656
      Filament; Intermediate filament protein

    6. NM_142388.3 → NP_650645.1  aluminum tubes, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650645.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q960Y8
      Related
      FBpp0088433
      Conserved Domains (1) summary
      TIGR02168
      Location:398 → 694
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    7. NM_169768.2 → NP_732256.1  aluminum tubes, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732256.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VEH0
      Related
      FBpp0088434
      Conserved Domains (1) summary
      pfam00038
      Location:384 → 656
      Filament; Intermediate filament protein

    8. NM_169769.2 → NP_732257.1  aluminum tubes, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732257.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VEH0
      Related
      FBpp0088435
      Conserved Domains (1) summary
      pfam00038
      Location:384 → 656
      Filament; Intermediate filament protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q95R41 Q95R41
    Q960Y8 Q960Y8
    Q9VEH0 Q9VEH0

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