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    SLX9 SLX9 ribosome biogenesis factor [ Sus scrofa (pig) ]

    Gene ID: 100623984, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLX9provided by VGNC
    Official Full Name
    SLX9 ribosome biogenesis factorprovided by VGNC
    Primary source
    VGNC:VGNC:87948
    See related
    Ensembl:ENSSSCG00000028571
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    FAM207A
    Expression
    Ubiquitous expression in kidney (RPKM 8.0), ovary (RPKM 7.6) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SLX9 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (207560855..207588502)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (217492687..217520304)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene PTTG1 interacting protein Neighboring gene eukaryotic translation initiation factor 4 gamma 2 pseudogene Neighboring gene integrin subunit beta 2 Neighboring gene serine/threonine-protein kinase WNK4-like Neighboring gene adenosine deaminase RNA specific B1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of preribosome, small subunit precursor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAM207A
    Names
    family with sequence similarity 207 member A
    uncharacterized protein C21orf70 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      207560855..207588502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013990226.2 → XP_013845680.2  protein FAM207A isoform X3

    2. XM_013990227.2 → XP_013845681.1  protein FAM207A isoform X2

      UniProtKB/TrEMBL
      A0A8D0T0Q4
      Conserved Domains (1) summary
      pfam15341
      Location:87 → 209
      SLX9; Ribosome biogenesis protein SLX9

    3. XM_005657182.3 → XP_005657239.1  protein FAM207A isoform X1

      UniProtKB/TrEMBL
      A0A8D0T0Q4, A0A8D1VXL8, I3LJV8
      Related
      ENSSSCP00000024370.1, ENSSSCT00000024296.4
      Conserved Domains (1) summary
      pfam15341
      Location:87 → 210
      SLX9; Ribosome biogenesis protein SLX9
    Nucleotide Protein
    Heading Accession and Version

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