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    CDC5L cell division cycle 5 like [ Homo sapiens (human) ]

    Gene ID: 988, updated on 27-Nov-2024

    Summary

    Official Symbol
    CDC5Lprovided by HGNC
    Official Full Name
    cell division cycle 5 likeprovided by HGNC
    Primary source
    HGNC:HGNC:1743
    See related
    Ensembl:ENSG00000096401 MIM:602868; AllianceGenome:HGNC:1743
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CDC5; CEF1; PCDC5RP; CDC5-LIKE; dJ319D22.1
    Summary
    The protein encoded by this gene shares a significant similarity with Schizosaccharomyces pombe cdc5 gene product, which is a cell cycle regulator important for G2/M transition. This protein has been demonstrated to act as a positive regulator of cell cycle G2/M progression. It was also found to be an essential component of a non-snRNA spliceosome, which contains at least five additional protein factors and is required for the second catalytic step of pre-mRNA splicing. [provided by RefSeq, Jul 2008]
    Expression
    Ubiquitous expression in testis (RPKM 9.6), bone marrow (RPKM 8.1) and 25 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See CDC5L in Genome Data Viewer
    Location:
    6p21.1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (44387706..44450425)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (44222452..44285059)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (44355443..44418162)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901322 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:44280829-44281388 Neighboring gene alanyl-tRNA synthetase 2, mitochondrial Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_91950 Neighboring gene spermatogenesis associated serine rich 1 Neighboring gene uncharacterized LOC124901323 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24638 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24640 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24639 Neighboring gene microRNA 4642 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17264 Neighboring gene CRISPRi-validated cis-regulatory element chr6.3216 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44443176-44443706 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:44447928-44448147 Neighboring gene uncharacterized LOC105375074 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44510389-44511019 Neighboring gene uncharacterized LOC105375075

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine.
    EBI GWAS Catalog
    Common variants at 6p21.1 are associated with large artery atherosclerotic stroke.
    EBI GWAS Catalog
    Identification of new susceptibility loci for osteoarthritis (arcOGEN): a genome-wide association study.
    EBI GWAS Catalog

    HIV-1 interactions

    Protein interactions

    Protein Gene Interaction Pubs
    Envelope surface glycoprotein gp120 env Tandem affinity purification and mass spectrometry analysis identify CDC5 cell division cycle 5-like (CDC5L), HIV-1 Gag, Gag/Pol, gp120, and Nef incorporated into staufen1 RNP complexes isolated from HIV-1-expressing cells PubMed
    Gag-Pol gag-pol Tandem affinity purification and mass spectrometry analysis identify CDC5 cell division cycle 5-like (CDC5L), hiv-1 Gag, Gag/Pol, gp120, and Nef incorporated into staufen1 RNP complexes isolated from HIV-1-expressing cells PubMed
    Nef nef Tandem affinity purification and mass spectrometry analysis identify CDC5 cell division cycle 5-like (CDC5L), HIV-1 Gag, Gag/Pol, gp120, and Nef incorporated into staufen1 RNP complexes isolated from HIV-1-expressing cells PubMed
    Pr55(Gag) gag Tandem affinity purification and mass spectrometry analysis identify CDC5 cell division cycle 5-like (CDC5L), HIV-1 Gag, Gag/Pol, gp120, and Nef incorporated into staufen1 RNP complexes isolated from HIV-1-expressing cells PubMed
    Rev rev HIV-1 Rev interacting protein, CDC5 cell division cycle 5-like (CDC5L), is identified by the in-vitro binding experiments involving cytosolic or nuclear extracts from HeLa cells. The interaction of Rev with CDC5L is increased by RRE PubMed
    retropepsin gag-pol Positional proteomics analysis identifies the cleavage of human CDC5 cell division cycle 5-like (CDC5L) at amino acid residues 231-232 and 495-496 by the HIV-1 protease PubMed

    Go to the HIV-1, Human Interaction Database

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • KIAA0432

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    part_of DNA replication factor A complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of Prp19 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of Prp19 complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of Prp19 complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    part_of U2-type catalytic step 2 spliceosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of catalytic step 2 spliceosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in membrane HDA PubMed 
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleoplasm TAS
    Traceable Author Statement
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of spliceosomal complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 

    General protein information

    Preferred Names
    cell division cycle 5-like protein
    Names
    CDC5 cell division cycle 5-like
    Cdc5-related protein
    dJ319D22.1 (CDC5-like protein)
    pombe cdc5-related protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001253.4NP_001244.1  cell division cycle 5-like protein

      See identical proteins and their annotated locations for NP_001244.1

      Status: REVIEWED

      Source sequence(s)
      AL133262, BC001568, DC422730
      Consensus CDS
      CCDS4912.1
      UniProtKB/Swiss-Prot
      Q76N46, Q99459, Q99974
      UniProtKB/TrEMBL
      B3KY60
      Related
      ENSP00000360532.3, ENST00000371477.4
      Conserved Domains (3) summary
      COG1196
      Location:626802
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      COG5147
      Location:6303
      REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
      pfam11831
      Location:404655
      Myb_Cef; pre-mRNA splicing factor component

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      44387706..44450425
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047419605.1XP_047275561.1  cell division cycle 5-like protein isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      44222452..44285059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054356904.1XP_054212879.1  cell division cycle 5-like protein isoform X1