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    R3hdm4 R3H domain containing 4 [ Mus musculus (house mouse) ]

    Gene ID: 109284, updated on 9-Dec-2024

    Summary

    Official Symbol
    R3hdm4provided by MGI
    Official Full Name
    R3H domain containing 4provided by MGI
    Primary source
    MGI:MGI:1924814
    See related
    Ensembl:ENSMUSG00000035781 AllianceGenome:MGI:1924814
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C030046I01Rik
    Summary
    Predicted to enable nucleic acid binding activity. Predicted to be located in nucleus. Is expressed in cortical plate. Orthologous to human R3HDM4 (R3H domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in stomach adult (RPKM 133.4), colon adult (RPKM 121.6) and 27 other tissues See more
    Orthologs
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    Genomic context

    See R3hdm4 in Genome Data Viewer
    Location:
    10 C1; 10 39.72 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (79745886..79752764, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (79910052..79916930, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 16 Neighboring gene STARR-positive B cell enhancer ABC_E2946 Neighboring gene STARR-positive B cell enhancer ABC_E252 Neighboring gene predicted gene, 24019 Neighboring gene KISS1 receptor Neighboring gene STARR-positive B cell enhancer ABC_E6878 Neighboring gene STARR-positive B cell enhancer ABC_E10625 Neighboring gene predicted gene, 40715

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function  
    enables nucleic acid binding  
    Component Evidence Code Pubs
    is_active_in cellular_component  
    located_in nucleus  

    General protein information

    Preferred Names
    R3H domain-containing protein 4
    Names
    R3H domain-containing protein C19orf22 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378997.1NP_001365926.1  R3H domain-containing protein 4 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC151846
      Conserved Domains (2) summary
      pfam01424
      Location:189248
      R3H; R3H domain
      pfam13902
      Location:50177
      R3H-assoc; R3H-associated N-terminal domain
    2. NM_177994.5NP_818775.2  R3H domain-containing protein 4 isoform 2

      See identical proteins and their annotated locations for NP_818775.2

      Status: VALIDATED

      Source sequence(s)
      AC151846
      Consensus CDS
      CCDS23997.1
      UniProtKB/Swiss-Prot
      Q4VBF2, Q8BJN1, Q8CGD7, Q8JZZ8
      UniProtKB/TrEMBL
      B2RRK4
      Related
      ENSMUSP00000044570.8, ENSMUST00000045628.15
      Conserved Domains (2) summary
      pfam01424
      Location:183242
      R3H; R3H domain
      pfam13902
      Location:50177
      R3H-assoc; R3H-associated N-terminal domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      79745886..79752764 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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