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    yobF DUF2527 domain-containing protein YobF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946338, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yobF
    Official Full Name
    DUF2527 domain-containing protein YobF
    Primary source
    ECOCYC:G7000
    Locus tag
    b1824
    See related
    ASAP:ABE-0006072
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1822
    Summary
    Repressed during biofilm formation. [More information is available at EcoGene: EG14382]. yobF was predicted to be a target of the small RNA OxyS. [More information is available at EcoCyc: G7000].
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    Genomic context

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    Sequence:
    NC_000913.3 (1907448..1907591, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene Mn(2(+)) exporter Neighboring gene 23S rRNA m(1)G745 methyltransferase Neighboring gene transcription antiterminator and regulator of mRNA stability CspC Neighboring gene uncharacterized protein YebO Neighboring gene PhoQ kinase inhibitor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Target prediction for small, noncoding RNAs in bacteria. Tjaden B, et al. Nucleic Acids Res, 2006. PMID 16717284, Free PMC Article
    2. Global approaches for finding small RNA and small open reading frame functions. Wassarman KM, et al. J Bacteriol, 2010 Jan. PMID 19854892, Free PMC Article
    3. Small RNAs and small proteins involved in resistance to cell envelope stress and acid shock in Escherichia coli: analysis of a bar-coded mutant collection. Hobbs EC, et al. J Bacteriol, 2010 Jan. PMID 19734312, Free PMC Article
    4. Small stress response proteins in Escherichia coli: proteins missed by classical proteomic studies. Hemm MR, et al. J Bacteriol, 2010 Jan. PMID 19734316, Free PMC Article
    5. Gene expression in Escherichia coli biofilms. Ren D, et al. Appl Microbiol Biotechnol, 2004 May. PMID 14727089

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to cell envelope stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular response to heat IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within cellular stress response to acid chemical IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DUF2527 domain-containing protein YobF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1907448..1907591 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416338.1 DUF2527 domain-containing protein YobF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416338.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P64508
      Conserved Domains (1) summary
      pfam10736
      Location:1 → 38
      DUF2527; Protein of unknown function (DUF2627)
    Nucleotide Protein
    Heading Accession and Version

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