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    ddpF putative D,D-dipeptide ABC transporter ATP-binding subunit DdpF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946020, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ddpF
    Official Full Name
    putative D,D-dipeptide ABC transporter ATP-binding subunit DdpF
    Primary source
    ECOCYC:G6777
    Locus tag
    b1483
    See related
    ASAP:ABE-0004947
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1477; yddO
    Summary
    RpoS regulon. [More information is available at EcoGene: EG13786]. YddO is an ATP-binding component of a predicted peptide ABC transporter. [More information is available at EcoCyc: G6777].
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    Genomic context

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    Sequence:
    NC_000913.3 (1557112..1558038, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene biofilm-dependent modulation protein Neighboring gene osmotically inducible peroxiredoxin OsmC Neighboring gene putative D,D-dipeptide ABC transporter ATP-binding subunit DdpD Neighboring gene putative D,D-dipeptide ABC transporter membrane subunit DdpC Neighboring gene putative D,D-dipeptide ABC transporter membrane subunit DdpB Neighboring gene putative D,D-dipeptide ABC transporter periplasmic binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. VanX, a bacterial D-alanyl-D-alanine dipeptidase: resistance, immunity, or survival function? Lessard IA, et al. Proc Natl Acad Sci U S A, 1999 Sep 28. PMID 10500118, Free PMC Article
    2. Homologs of the vancomycin resistance D-Ala-D-Ala dipeptidase VanX in Streptomyces toyocaensis, Escherichia coli and Synechocystis: attributes of catalytic efficiency, stereoselectivity and regulation with implications for function. Lessard IA, et al. Chem Biol, 1998 Sep. PMID 9751644
    3. Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. Zimmer DP, et al. Proc Natl Acad Sci U S A, 2000 Dec 19. PMID 11121068, Free PMC Article
    4. Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks. Rooney JP, et al. Genomics, 2009 Jan. PMID 18824089, Free PMC Article
    5. The Escherichia coli ATP-binding cassette (ABC) proteins. Linton KJ, et al. Mol Microbiol, 1998 Apr. PMID 9593292

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in dipeptide transport NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in peptide transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of ATP-binding cassette (ABC) transporter complex RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    part_of ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in membrane NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative D,D-dipeptide ABC transporter ATP-binding subunit DdpF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1557112..1558038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416000.1 putative D,D-dipeptide ABC transporter ATP-binding subunit DdpF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416000.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8T6PUW0
      Conserved Domains (2) summary
      COG1124
      Location:3 → 253
      DppF; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]
      pfam08352
      Location:222 → 287
      oligo_HPY; Oligopeptide/dipeptide transporter, C-terminal region
    Nucleotide Protein
    Heading Accession and Version

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