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    Ribosomal protein S4 (RPS4A) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816243, updated on 18-Sep-2024

    Summary

    Official Full Name
    Ribosomal protein S4 (RPS4A) family protein
    Primary source
    TAIR:AT2G17360
    Locus tag
    AT2G17360
    See related
    Araport:AT2G17360
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5J6.12; F5J6_12
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (7546440..7548406)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pantothenate kinase Neighboring gene beta-mannosyltransferase-like protein Neighboring gene 3-hydroxy-3-methylglutaryl-CoA reductase 2 Neighboring gene associated protein 19

    Interactions

    General gene information

    NM_001202610.1
    NM_127291.4

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in translation  

    General protein information

    Preferred Names
    Ribosomal protein S4 (RPS4A) family protein
    NP_001189539.1
    • Ribosomal protein S4 (RPS4A) family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1).
    NP_565414.1
    • Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1386 Blast hits to 1386 proteins in 444 species: Archae - 258; Bacteria - 2; Metazoa - 428; Fungi - 183; Plants - 271; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7546440..7548406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127291.4 → NP_565414.1  Ribosomal protein S4 (RPS4A) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565414.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q7XJS7, Q93VH9
      UniProtKB/TrEMBL
      A0A5S9WYP6, A0A654FZG2
      Conserved Domains (1) summary
      PLN00036
      Location:1 → 261
      PLN00036; 40S ribosomal protein S4; Provisional
    2. NM_001202610.1 → NP_001189539.1  Ribosomal protein S4 (RPS4A) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189539.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4IMI7
      Conserved Domains (4) summary
      PLN00036
      Location:1 → 181
      PLN00036; 40S ribosomal protein S4; Provisional
      cd00165
      Location:51 → 112
      S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
      pfam00900
      Location:95 → 169
      Ribosomal_S4e; Ribosomal family S4e
      pfam08071
      Location:3 → 39
      RS4NT; RS4NT (NUC023) domain
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